BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.2965.p
         (401 letters)

Database: BlastDatabases/707/707 
           3697 sequences; 1,221,021 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|152980133|ref|YP_001353090.1| cystathionine beta-lyase [Janth...   607   e-175
gi|152980865|ref|YP_001353847.1| hypothetical protein mma_2157 [...   108   5e-25

>gi|152980133|ref|YP_001353090.1| cystathionine beta-lyase
           [Janthinobacterium sp. Marseille]
          Length = 380

 Score =  607 bits (1566), Expect = e-175,   Method: Compositional matrix adjust.
 Identities = 280/378 (74%), Positives = 330/378 (87%)

Query: 24  LIHSSYRAPEGFEAFPVGIHHASTVLFPNVAAMRSRDWREKLGYTYGLHGTPTSFVLEAR 83
           +IH+ YRAP+GF A P  IHHASTVLF +VA+MRSR+W++K  YTYGLHGTPT+F LEAR
Sbjct: 1   MIHNDYRAPDGFSALPQAIHHASTVLFKDVASMRSRNWQDKNAYTYGLHGTPTTFTLEAR 60

Query: 84  LAEIEGGSHCRVTPSGLAAIAMVNFAFLKSGDDVLLPDNVYGPSKDLGQWLERDFQITAR 143
           LA IE G HC + PSGLAAIA+V+FAFLKSGDDVL+PDNVY P+++L  WL++DF ITAR
Sbjct: 61  LAAIEDGKHCVLAPSGLAAIALVDFAFLKSGDDVLIPDNVYNPNRELANWLQQDFGITAR 120

Query: 144 FYDPMIGAGLAELIQPNTRLIWTEAPGSVSMEVPDIPALCRAAHARGVLVAIDNTWAAGL 203
           +YDP+IG+G++ LIQPNTRLIWTEAPGSVSMEVPD+PA+C+AAHA+GVLVA+DNTWAAGL
Sbjct: 121 YYDPLIGSGISGLIQPNTRLIWTEAPGSVSMEVPDLPAICQAAHAKGVLVALDNTWAAGL 180

Query: 204 AFKAFDHGVDIVMQAVTKYQSGGSDVLMGAVIVRDQALNEKLELAHMRLGFGVGMDDVYL 263
           A + F+ GVDI+MQA+TKYQSGGSDVLMGAVI +D+ALN++LE AHMRLGFGV  DDVYL
Sbjct: 181 ALRGFELGVDIIMQALTKYQSGGSDVLMGAVITQDKALNQRLETAHMRLGFGVAADDVYL 240

Query: 264 VLRSLSSMRLRFQAHDAAARKVAAWLKQRPEIVAVLHPAFEDCPGHENWKRDFTGAGGLF 323
           VLRSL +M+LRF+AHDAAAR VAAWL+ RPEI AVLHPA  +CPGH  W+RDF+GAGGLF
Sbjct: 241 VLRSLPTMKLRFEAHDAAARTVAAWLQARPEIAAVLHPALPECPGHAIWQRDFSGAGGLF 300

Query: 324 SVIFDPRYGEQQTDRFVDSLRLFKIGYSWGGAHSLCVPYRMRGMRRQWQREGQLVRFNIG 383
           SV+FDPRY E QTDRFVDSL+LFKIG+SWGG HSL VPYRM+ MR  W  +GQLVR NIG
Sbjct: 301 SVVFDPRYSEAQTDRFVDSLQLFKIGFSWGGVHSLAVPYRMQHMRGNWPHQGQLVRLNIG 360

Query: 384 LESPEDLIADIEQALAQL 401
           LE P+DLIADIEQA   +
Sbjct: 361 LEDPQDLIADIEQAFKAM 378


>gi|152980865|ref|YP_001353847.1| hypothetical protein mma_2157
           [Janthinobacterium sp. Marseille]
          Length = 413

 Score =  108 bits (271), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 108/409 (26%), Positives = 173/409 (42%), Gaps = 43/409 (10%)

Query: 19  DPQTALIHSSYRAPEGFEAFPVGIHHASTVLFPNVAAMRSRDWREKLGYTYGLHGTPTSF 78
           D Q A+ H S   P         IH + T  + +   + +    +K GY YG  G PT  
Sbjct: 17  DRQKAIEHGSLHKP---------IHTSVTFGYNDARELATVFQGKKPGYRYGRQGNPTVA 67

Query: 79  VLEARLAEIEGGSHCRVTPSGLAAIAMVNFAFLKSGDDVLLPDNVYGPSKDLGQWLE-RD 137
            LE ++ ++E G       +G+AAI  V  A L+ GD V+    ++G +  L Q +  + 
Sbjct: 68  ALEDKVNKMEEGLSTICFATGMAAIGAVVQALLREGDHVVSSAFLFGNTNSLWQTVGGQG 127

Query: 138 FQITARFYDPMIGAGLAELIQPNTRLIWTEAPGSVSMEVPDIPALCRAAHARGVLVAIDN 197
            QI     D      +   IQPNT +++ E   +   +V D+  + +    RG+L  +DN
Sbjct: 128 VQIA--MVDATDVKNVEAAIQPNTCIVFVETIANPRTQVADLARIGKLCAERGILYVVDN 185

Query: 198 TWAAGLAFKAFDHGVDIVMQAVTKYQSGGSDVLMGAVI-------VRDQALNEKLE---- 246
           T  +   F+    G  IV+ A+TK   G  + L G++         R   + E  +    
Sbjct: 186 TMTSPYLFRPKTVGASIVINALTKSIGGHGNALGGSLTDTGLYDWARFPNILETYKRYPT 245

Query: 247 ----LAHMR------LGFGVGMDDVYLVLRSLSSMRLRFQAHDAAARKVAAWLKQRPEIV 296
               +A +R       G  +G +  + +     +M LR     A A  VA  L+    + 
Sbjct: 246 AQWGMAQIRAKALRDFGGSLGPEAAHHLAVGAETMALRLDRECANALAVAQMLEADERVA 305

Query: 297 AVLHPAFEDCPGHENWKRDFTGAGGLFSVIFDPRYGEQQTDRFVDSLRLFKIGYSWGGAH 356
           AV +P  +  P H      F   G LFS  F+ + G    D +++ L+L     + G   
Sbjct: 306 AVYYPGLKSHPQHAISTELFRAYGSLFS--FELKDGIDCFD-YLNRLQLGVSASNLGDTR 362

Query: 357 SLCVP------YRMRGMRRQWQREGQ-LVRFNIGLESPEDLIADIEQAL 398
           +L +P      Y M   RR      + L+R +IG+E   DL+ D  QAL
Sbjct: 363 TLVIPVAHTIFYEMGAERRASMGIAESLIRVSIGIEDTADLVEDFRQAL 411


  Database: BlastDatabases/707/707
    Posted date:  Apr 13, 2011 12:58 PM
  Number of letters in database: 1,221,021
  Number of sequences in database:  3697
  
Lambda     K      H
   0.322    0.138    0.426 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3697
Number of Hits to DB: 988,819
Number of extensions: 42661
Number of successful extensions: 102
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 101
Number of HSP's successfully gapped: 2
Length of query: 401
Length of database: 1,221,021
Length adjustment: 85
Effective length of query: 316
Effective length of database: 906,776
Effective search space: 286541216
Effective search space used: 286541216
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 130 (54.7 bits)