BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.2963.p
         (204 letters)

Database: BlastDatabases/707/707 
           3697 sequences; 1,221,021 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|152982540|ref|YP_001353791.1| transcriptional activator FlhC ...   315   1e-87

>gi|152982540|ref|YP_001353791.1| transcriptional activator FlhC
           [Janthinobacterium sp. Marseille]
          Length = 181

 Score =  315 bits (807), Expect = 1e-87,   Method: Compositional matrix adjust.
 Identities = 149/174 (85%), Positives = 162/174 (93%)

Query: 1   MAKKSVVTEAQEIQLAIELINLGARLQLLESETSLSRERLLKLYKELKGVSPPKGMLPFS 60
           MAKKSVVTEAQEIQLAIELINLGARLQLLESETSLSRERLLKLYKEL+GVSPPKGMLPFS
Sbjct: 1   MAKKSVVTEAQEIQLAIELINLGARLQLLESETSLSRERLLKLYKELRGVSPPKGMLPFS 60

Query: 61  TDWFITWQPNIHSSLFINIHRYLVEYARISGIEAVMKAYKLYLEQVGYTDSGEPVLSLTR 120
           TDWFITWQPNIHSSLF+ IH+YL+E+A+ISGI+AVMKAYKLYLEQV     GEPVLSLTR
Sbjct: 61  TDWFITWQPNIHSSLFMGIHKYLIEHAQISGIQAVMKAYKLYLEQVELGADGEPVLSLTR 120

Query: 121 AWTLVRFFESKMLMTTPCCKCGGHFVVHRLDLHQDYLCGLCHMPSRAGKTKKAK 174
           AWTLVRFF+SKML T  C +CGG+FVVHRLDL+ +Y CGLCHMPSRAGKTK+AK
Sbjct: 121 AWTLVRFFDSKMLATACCSECGGNFVVHRLDLNANYTCGLCHMPSRAGKTKRAK 174


  Database: BlastDatabases/707/707
    Posted date:  Apr 13, 2011 12:58 PM
  Number of letters in database: 1,221,021
  Number of sequences in database:  3697
  
Lambda     K      H
   0.322    0.135    0.404 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3697
Number of Hits to DB: 358,812
Number of extensions: 12186
Number of successful extensions: 29
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 29
Number of HSP's successfully gapped: 1
Length of query: 204
Length of database: 1,221,021
Length adjustment: 79
Effective length of query: 125
Effective length of database: 928,958
Effective search space: 116119750
Effective search space used: 116119750
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 127 (53.5 bits)