BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.2961.p
         (286 letters)

Database: BlastDatabases/707/707 
           3697 sequences; 1,221,021 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|152980324|ref|YP_001353789.1| flagellar motor protein MotA [J...   512   e-146
gi|152980181|ref|YP_001353772.1| MotA chemotaxis protein [Janthi...    59   3e-10

>gi|152980324|ref|YP_001353789.1| flagellar motor protein MotA
           [Janthinobacterium sp. Marseille]
          Length = 286

 Score =  512 bits (1318), Expect = e-146,   Method: Compositional matrix adjust.
 Identities = 247/286 (86%), Positives = 271/286 (94%)

Query: 1   LLVIIGYIVVMASVFGGFAMAGGHLGALFQPIELLMIGGAAGGAFLVGNNGKAIKATLKA 60
           +LVIIGY+VV+ SVFGGFA+AGGHL ALFQP+ELLMIGGAA GAF VGNNGKAIKATLKA
Sbjct: 1   MLVIIGYLVVVLSVFGGFALAGGHLAALFQPLELLMIGGAAVGAFFVGNNGKAIKATLKA 60

Query: 61  LPTVFKGSAYTKALYMELMALLFEILTKSRKEGLMSIEGDIEEPESSPIFSKYPGVLADH 120
           LP+VFKGS YTK+LYMELM LLFEILTK RKEGLMSIEGDIE PE S IF+KYP VLADH
Sbjct: 61  LPSVFKGSRYTKSLYMELMTLLFEILTKVRKEGLMSIEGDIEAPEESAIFAKYPTVLADH 120

Query: 121 HLIEFMTDYLRLMVSGNMDAFQIENLMDNEIETHHHEGEIPVHCIAKLGDGMPAFGIVAA 180
           H IEFMTDYLRLMVSGNMDAFQIENLMDNEIETHH EGE+PVHC+AK+GDG+PAFGIVAA
Sbjct: 121 HTIEFMTDYLRLMVSGNMDAFQIENLMDNEIETHHAEGEVPVHCVAKVGDGLPAFGIVAA 180

Query: 181 VMGVVHTMESVGIPPSELGMLIAHALVGTFLGILLAYGFVGPLSSLLEQKLHESTKIYQC 240
           VMGVVHTMESVG+PP+ELGMLIAHALVGTFLGILL+YGFV PLSSLLEQKLHES+KI+QC
Sbjct: 181 VMGVVHTMESVGLPPAELGMLIAHALVGTFLGILLSYGFVTPLSSLLEQKLHESSKIFQC 240

Query: 241 VKVTLLASLNGYAPALSIEFGRKVLFSTERPTFLELEEHVKQAKSK 286
           VKVTLLASLNGYAPAL++EFGRKVLFSTERP+F E+EEH++Q+KSK
Sbjct: 241 VKVTLLASLNGYAPALAVEFGRKVLFSTERPSFSEMEEHIRQSKSK 286


>gi|152980181|ref|YP_001353772.1| MotA chemotaxis protein
           [Janthinobacterium sp. Marseille]
          Length = 246

 Score = 59.3 bits (142), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 59/213 (27%), Positives = 99/213 (46%), Gaps = 32/213 (15%)

Query: 27  ALFQPIELLMIGGAAGGAFLVGNNGKAIKATLKALPTVF--KGSAYTKALYMELMALLFE 84
           +L QP   +++     GA L+ +  +     LK    VF  K   Y  AL  ++ A  + 
Sbjct: 29  SLVQPAAFIIVVVGTIGAVLLQSGWRNFVQGLKMSGQVFMPKEDDYP-ALIKDITA--WS 85

Query: 85  ILTKSRKEGLMSIE---GDIEEPESSPIFSKYPGVLADHHLIEFMTDYLRLMVSGNMDAF 141
           ++  +R+EGL+S+E    DI++P                    F+   LRL+V G +D  
Sbjct: 86  VI--ARREGLLSLERVIKDIQDP--------------------FIAHGLRLIVDG-VDPT 122

Query: 142 QIENLMDNEIETHHHEGEIPVHCIAKLGDGMPAFGIVAAVMGVVHTMESVGIPPSELGML 201
           ++ +++D EI  +     + +      G   P  GI+ AV+G++H ME++   PS LG  
Sbjct: 123 KLRDVLDLEIGAYETRQRLSIKIWEAAGGYAPTIGILGAVLGLIHVMENLS-DPSRLGSG 181

Query: 202 IAHALVGTFLGILLAYGFVGPLSSLLEQKLHES 234
           IA A V T  G+  A     P+SS L+  ++  
Sbjct: 182 IAVAFVATIYGVGFANLIFLPISSKLKALVNRD 214


  Database: BlastDatabases/707/707
    Posted date:  Apr 13, 2011 12:58 PM
  Number of letters in database: 1,221,021
  Number of sequences in database:  3697
  
Lambda     K      H
   0.322    0.140    0.399 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3697
Number of Hits to DB: 668,700
Number of extensions: 28430
Number of successful extensions: 108
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 106
Number of HSP's successfully gapped: 2
Length of query: 286
Length of database: 1,221,021
Length adjustment: 82
Effective length of query: 204
Effective length of database: 917,867
Effective search space: 187244868
Effective search space used: 187244868
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 129 (54.3 bits)