BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.2958.p (121 letters) Database: BlastDatabases/707/707 3697 sequences; 1,221,021 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|152982726|ref|YP_001353786.1| chemotaxis protein CheY [Janthi... 212 6e-57 gi|152980357|ref|YP_001353780.1| CheY chemotaxis protein [Janthi... 94 2e-21 gi|152982362|ref|YP_001353295.1| CheY chemotaxis protein [Janthi... 92 7e-21 gi|152980535|ref|YP_001351704.1| CheA chemotaxis protein [Janthi... 82 1e-17 gi|152980997|ref|YP_001354642.1| two-component hybrid sensor and... 75 1e-15 >gi|152982726|ref|YP_001353786.1| chemotaxis protein CheY [Janthinobacterium sp. Marseille] Length = 121 Score = 212 bits (539), Expect = 6e-57, Method: Compositional matrix adjust. Identities = 100/121 (82%), Positives = 112/121 (92%) Query: 1 MSKTILAVDDSGSLRQMVVFSLKAAGYNVTEAVDGVDALEKAKTHTFDLVLTDQNMPRMD 60 M+KTILAVDDSGSLRQMVVFSL+AAGY VTEAVDG D L+KAKT FDLVLTDQNMPRMD Sbjct: 1 MAKTILAVDDSGSLRQMVVFSLRAAGYQVTEAVDGQDGLDKAKTQVFDLVLTDQNMPRMD 60 Query: 61 GLTLIRSLRELTSYARVPILMLTTEFSDEMKAKGKAAGANGWLVKPFDPQRLTEVVRKVI 120 G +LIR+LR L++Y ++PIL+LTTE SDEMKAKG+AAGANGWLVKPFDPQRLTEVV+KVI Sbjct: 61 GFSLIRALRALSTYQKIPILVLTTESSDEMKAKGRAAGANGWLVKPFDPQRLTEVVKKVI 120 Query: 121 G 121 G Sbjct: 121 G 121 >gi|152980357|ref|YP_001353780.1| CheY chemotaxis protein [Janthinobacterium sp. Marseille] Length = 132 Score = 94.0 bits (232), Expect = 2e-21, Method: Compositional matrix adjust. Identities = 50/117 (42%), Positives = 72/117 (61%), Gaps = 1/117 (0%) Query: 5 ILAVDDSGSLRQMVVFSLKAAGY-NVTEAVDGVDALEKAKTHTFDLVLTDQNMPRMDGLT 63 L VDD ++R++V LK GY NV EA DG AL K ++ FD V++D NMP MDGLT Sbjct: 8 FLVVDDFSTMRRIVRNLLKELGYTNVDEAEDGAMALAKLRSEQFDFVVSDWNMPNMDGLT 67 Query: 64 LIRSLRELTSYARVPILMLTTEFSDEMKAKGKAAGANGWLVKPFDPQRLTEVVRKVI 120 +++ +R + +++P+LM+T E E AGANG++VKPF L E + K+ Sbjct: 68 MLQHIRADPALSKLPVLMVTAEAKKENIIAAAQAGANGYVVKPFTAATLDEKLAKIF 124 >gi|152982362|ref|YP_001353295.1| CheY chemotaxis protein [Janthinobacterium sp. Marseille] Length = 121 Score = 92.4 bits (228), Expect = 7e-21, Method: Compositional matrix adjust. Identities = 53/117 (45%), Positives = 69/117 (58%), Gaps = 1/117 (0%) Query: 5 ILAVDDSGSLRQMVVFSLKAAGYNVTEAVDGVDALEKAK-THTFDLVLTDQNMPRMDGLT 63 IL VDDS ++R V LK +V AVDG D L K K + LV++D NMP MDGLT Sbjct: 4 ILVVDDSATVRNEVGDFLKKNDLDVVLAVDGRDGLAKMKGDSSIKLVISDVNMPNMDGLT 63 Query: 64 LIRSLRELTSYARVPILMLTTEFSDEMKAKGKAAGANGWLVKPFDPQRLTEVVRKVI 120 + +R + V I+MLTTE S MK +GKAAG GW+VKPF + +K++ Sbjct: 64 MAEKIRSELGNSSVNIIMLTTENSPMMKERGKAAGIKGWIVKPFKGDAVLATFKKLV 120 >gi|152980535|ref|YP_001351704.1| CheA chemotaxis protein [Janthinobacterium sp. Marseille] Length = 756 Score = 81.6 bits (200), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 43/120 (35%), Positives = 72/120 (60%), Gaps = 1/120 (0%) Query: 3 KTILAVDDSGSLRQMVVFSLKAAGYNVTEAVDGVDALEKAKTHTFDLVLTDQNMPRMDGL 62 K +L VDDS ++R++ L GY V AVDG+D +T FDLV+TD +MPRMDG+ Sbjct: 635 KKVLVVDDSLTVRELERKLLSNCGYQVVVAVDGMDGWNAVRTEHFDLVITDIDMPRMDGI 694 Query: 63 TLIRSLRELTSYARVPILMLTTEFSDEMKAKGKAAGANGWLVK-PFDPQRLTEVVRKVIG 121 L+ +R+ + +P+++++ + +E + +G AGA+ + K F + L + V +IG Sbjct: 695 ELVSLIRQAANLQSLPVMIVSYKDREEDRQRGLDAGADYYFTKSSFHDESLLQAVVDLIG 754 >gi|152980997|ref|YP_001354642.1| two-component hybrid sensor and regulator [Janthinobacterium sp. Marseille] Length = 1901 Score = 74.7 bits (182), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 40/112 (35%), Positives = 65/112 (58%) Query: 5 ILAVDDSGSLRQMVVFSLKAAGYNVTEAVDGVDALEKAKTHTFDLVLTDQNMPRMDGLTL 64 ++ VDDS ++R++ L GY V A DGVDAL+ ++ T D++L D MPRMDG L Sbjct: 1779 VMVVDDSLTVRRVTQRLLTREGYQVVLAKDGVDALQHLQSVTPDVMLVDIEMPRMDGFDL 1838 Query: 65 IRSLRELTSYARVPILMLTTEFSDEMKAKGKAAGANGWLVKPFDPQRLTEVV 116 R++R+ +PI+M+T+ + + + G N +L KP+ L E++ Sbjct: 1839 TRNIRDDERTRDIPIIMITSRTASKHRNYAMELGVNEYLGKPYQEDVLLELI 1890 Database: BlastDatabases/707/707 Posted date: Apr 13, 2011 12:58 PM Number of letters in database: 1,221,021 Number of sequences in database: 3697 Lambda K H 0.318 0.133 0.367 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3697 Number of Hits to DB: 222,989 Number of extensions: 6803 Number of successful extensions: 110 Number of sequences better than 1.0e-08: 29 Number of HSP's gapped: 110 Number of HSP's successfully gapped: 29 Length of query: 121 Length of database: 1,221,021 Length adjustment: 72 Effective length of query: 49 Effective length of database: 954,837 Effective search space: 46787013 Effective search space used: 46787013 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 124 (52.4 bits)