BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.2957.p (703 letters) Database: BlastDatabases/707/707 3697 sequences; 1,221,021 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|152980691|ref|YP_001353785.1| CheA chemotaxis protein [Janthi... 950 0.0 gi|152980997|ref|YP_001354642.1| two-component hybrid sensor and... 221 1e-58 gi|152980198|ref|YP_001352775.1| CheA chemotaxis protein [Janthi... 205 6e-54 gi|152980535|ref|YP_001351704.1| CheA chemotaxis protein [Janthi... 194 1e-50 gi|152981669|ref|YP_001353298.1| chemotaxis related protein [Jan... 100 5e-22 >gi|152980691|ref|YP_001353785.1| CheA chemotaxis protein [Janthinobacterium sp. Marseille] Length = 712 Score = 950 bits (2455), Expect = 0.0, Method: Compositional matrix adjust. Identities = 492/707 (69%), Positives = 569/707 (80%), Gaps = 21/707 (2%) Query: 1 MEKLLLAVNVESPDPEDLNAVFRAAHSIKGGSSTFGLTDIAEVTHVLESLLDRIRQGQMA 60 MEKLLLAV+V +PD EDLNA+FRAAHSIKGG++TFG+TD+ EVTHVLE+LLDRIR+G+MA Sbjct: 23 MEKLLLAVDVSAPDEEDLNAIFRAAHSIKGGAATFGITDLTEVTHVLETLLDRIRKGEMA 82 Query: 61 LTSEHVDAFLAAKDVLKSMLDGHKHGAEVDQEAVAQVRMLLEALSQGKSSSAAAPKAAAA 120 L +EHVDAFL+AKDVLK LDGH+ VD EAVA VR+LLE+LSQ AA P++A Sbjct: 83 LMAEHVDAFLSAKDVLKMQLDGHRLHTPVDLEAVADVRILLESLSQ---DDAAPPQSA-- 137 Query: 121 PVAAVVG--PGGVRRYRLDMPVIADKDADALADELSMLGKLEKSKSPEGRWVFILDTAEP 178 PVAA V P G RR+R+++P + +D DALA EL +LG++++ P+ R VF L T E Sbjct: 138 PVAAAVPGIPSGDRRFRIELPQTSARDVDALAAELGLLGEIQRDVLPDQRAVFTLSTQEG 197 Query: 179 IDDVVAICAFIVNVADLKISQAVEAAQGSDEERGYGFFDNFVTQEERERTQGYGFFDN-H 237 +DD++AIC+FI++ DLKI++ E G + + E QGYGFF+ H Sbjct: 198 VDDIIAICSFILDPQDLKITE---------EAVIKGVHQSIDDRSRNEEEQGYGFFEPLH 248 Query: 238 TAIEDKEREQGYGFFAPFVPLDISPKKAEADGAAHATGNGNG-NAHHDDAHLHGEHASAE 296 + I E QGYGFFAPFVPL + P D H GN A A Sbjct: 249 STI--AENAQGYGFFAPFVPLPL-PDATSKDVVEHDEEKGNALAVEEVHAAAATTDKKAV 305 Query: 297 KKAAKGGAGLAQESSSIRVSIEKVDQLINLVGELVITQAMIEQRVGKLDPMHHEHLLNSV 356 K ++ ESSSIRV IEKVDQLINLVGELVITQAMIEQR G LDPM HE LLNSV Sbjct: 306 AKRDTDKMNVSAESSSIRVGIEKVDQLINLVGELVITQAMIEQRTGALDPMQHERLLNSV 365 Query: 357 SQLSRNTRDLQESVMSIRMMPMDYVFSRFPRMVRDLAHKLGKQVEFVTHGAATELDKGLI 416 SQL+RNTRDLQE+VMSIRMMPMDYVFSRFPRMVRDLA KLGK+VEFVTHGAATELDKGLI Sbjct: 366 SQLTRNTRDLQEAVMSIRMMPMDYVFSRFPRMVRDLASKLGKKVEFVTHGAATELDKGLI 425 Query: 417 ERIVDPLTHLVRNSIDHGIELPEARRAAGKGEAGVLSLSAEHQGGNIIIEVTDDGGGLNR 476 ERIVDPLTHLVRNSIDHGIE+P+ R AAGK +G LSLSA HQGGNIIIEV+DDGGGLNR Sbjct: 426 ERIVDPLTHLVRNSIDHGIEMPDTRVAAGKSASGQLSLSAGHQGGNIIIEVSDDGGGLNR 485 Query: 477 DKILAKAKQQGMPVTDNLSDADVWQLIFEPGFSTAEQVTDVSGRGVGMDVVKRNILAMGG 536 ++ILAKAKQQG+PV+D+L D +VWQLIF PGFSTAE VTDVSGRGVGMDVVKRNI AMGG Sbjct: 486 ERILAKAKQQGLPVSDDLPDEEVWQLIFAPGFSTAEAVTDVSGRGVGMDVVKRNITAMGG 545 Query: 537 AVDIRSSKGFGTTISISLPLTLAILDGMSIRIGEEVYILPLGYVVESLQPLPQDIKEISG 596 +VDIRSSKG+GTTI ISLPLTLAILDGMSI++G+E+YILPLGYVVESLQP DIK+ISG Sbjct: 546 SVDIRSSKGYGTTILISLPLTLAILDGMSIKVGDEIYILPLGYVVESLQPELADIKDISG 605 Query: 597 QGQVLRVRGEYLPLIPLYQIFNIEPSFTDPSQGLVVILESDGKKAALFVDDLIGQQQIVV 656 QGQV++VRG+YLPLIPLY+IF+IEP FTDPS+G+VVILES+ KKAALFVDDL+GQQQ+VV Sbjct: 606 QGQVIKVRGDYLPLIPLYKIFSIEPRFTDPSEGIVVILESESKKAALFVDDLVGQQQVVV 665 Query: 657 KNLESNYRKVAGISGATILGDGGVALIVDVAALLRSSRQLNDESVFS 703 KNLESNYRKVAGISGATILGDGGVALI+DVAALLRSSRQLNDES++S Sbjct: 666 KNLESNYRKVAGISGATILGDGGVALIIDVAALLRSSRQLNDESIYS 712 >gi|152980997|ref|YP_001354642.1| two-component hybrid sensor and regulator [Janthinobacterium sp. Marseille] Length = 1901 Score = 221 bits (563), Expect = 1e-58, Method: Compositional matrix adjust. Identities = 128/337 (37%), Positives = 198/337 (58%), Gaps = 13/337 (3%) Query: 360 SRNTRDLQESVMSIRMMPMDYVFSRFPRMVRDLAHKLGKQVEFVTHGAATELDKGLIERI 419 +R TRDLQ+ +M +RM+ + R R+ R + + K+V G+A E+D+G++E++ Sbjct: 1400 ARLTRDLQQDLMRVRMVQFASISERLFRVTRQASKETDKRVNLDIRGSAVEIDRGVLEKM 1459 Query: 420 VDPLTHLVRNSIDHGIELPEARRAAGKGEAGVLSLSAEHQGGNIIIEVTDDGGGLNRDKI 479 P HL+RN+I HGIE E R+AAGK E G L + +G ++I +DDG GLN D I Sbjct: 1460 AGPFEHLLRNAIVHGIESREKRQAAGKNETGELRIEIRQEGNEVVIHFSDDGQGLNLDNI 1519 Query: 480 LAKAKQQGMPVTD-NLSDADVWQLIFEPGFSTAEQVTDVSGRGVGMDVVKRNILAMGGAV 538 KA G+ D LSD++ LIF PGFSTAE++T+++GRG+GMDVV+ ++GG V Sbjct: 1520 RNKALSSGLLTEDMALSDSETTDLIFHPGFSTAEEITELAGRGIGMDVVRSEAASLGGRV 1579 Query: 539 DIRSSKGFGTTISISLPLTLAILDGMSIRIGEEVYILPLGYVVESLQ-----PLPQDIKE 593 I S G G +I LPLTLA+ + + G + Y +P +VE +Q PL E Sbjct: 1580 AIASEAGKGANFTIHLPLTLAVTQVVLLSTGGKTYAIP-SVLVEQVQQLKTGPLAAAYNE 1638 Query: 594 ISGQGQVLRVRGEYL-PLIPLYQIFNIEPSFTDPSQGLVVILESDGKKAALFVDDLIGQQ 652 + Q RV YL L+ Q+ + ++ ++IL+S ++ AL VD+++G + Sbjct: 1639 GAVMWQSQRVPMHYLSSLLGDLQVAPVTQQYSP-----LLILKSGNERVALHVDEILGNR 1693 Query: 653 QIVVKNLESNYRKVAGISGATILGDGGVALIVDVAAL 689 ++VVKN+ ++ GI+GAT+LG G + LI++ L Sbjct: 1694 EVVVKNIGPQLSRMIGIAGATVLGSGEIVLILNPVPL 1730 >gi|152980198|ref|YP_001352775.1| CheA chemotaxis protein [Janthinobacterium sp. Marseille] Length = 615 Score = 205 bits (522), Expect = 6e-54, Method: Compositional matrix adjust. Identities = 141/404 (34%), Positives = 226/404 (55%), Gaps = 22/404 (5%) Query: 301 KGGAGLAQESSSIRVSIEKVDQLINLVGELV--ITQA-MIEQRVGKLDPMHHEHLL---- 353 +GGA L ++S IRV K+D L+ + GE V QA ++ +++ + H L Sbjct: 217 QGGAALKEDS--IRVDAVKLDTLLEVAGESVQAANQASVLLEKLAQFPVEGHAATLMAAL 274 Query: 354 -NSVSQLSRNTRDLQESVMSIRMMPMDYVFSRFPRMVRDLAHKLGKQVEFVTHGAATELD 412 ++++ SR + +LQ + ++ RM P+ +F +FPR+VR+LA LGK VE GA TE+D Sbjct: 275 AETLNRASRYSTELQRATLATRMQPVGKLFQKFPRLVRELAKDLGKDVELQIEGAETEVD 334 Query: 413 KGLIERIVDPLTHLVRNSIDHGIELPEARRAAGKGEAGVLSLSAEHQGGNIIIEVTDDGG 472 + +++ + DPL H++RNS+DHGIE R +GK + L A + +++IE++DDG Sbjct: 335 RVVVDSLYDPLVHMLRNSLDHGIEEAAVRAKSGKPAKSTILLKAWQEASSVMIELSDDGK 394 Query: 473 GLNRDKILAKAKQQGMPVTDNL--SDADVWQLIFEPGFSTAEQVTDVSGRGVGMDVVKRN 530 G++ ++ AKA +G+ ++DN S ++ QL+F PGFST E VSGRGVGMDVVK Sbjct: 395 GMDGQQLRAKAISKGL-ISDNAAQSQEEMLQLVFLPGFSTKEVANSVSGRGVGMDVVKTA 453 Query: 531 ILAMGGAVDIRSSKGFGTTISISLPLTLAILDGMSIRIGEEVYILPLGYVVESLQPLPQD 590 + GA+ I S G GT SI LP+ L+I+ M +R + LP+ VV+ + LP++ Sbjct: 454 VEKHRGAITIDSVLGAGTRFSIRLPIELSIVPTMLVRSSDAALALPMA-VVQRVVELPEE 512 Query: 591 IKEISGQGQVLRVRGEYLPLIPLYQIFNIEPSFTDPSQGLVVILESDGKKAALFVDDLIG 650 +++ G VLR +G LP+ L E V I+ + + L V + G Sbjct: 513 FEQVGG-APVLRDQGRPLPVRSLAGALAYEVGVEK-----VGIVIAAPQPYILSVGMVEG 566 Query: 651 QQQIVVKNLESNYRKVAGISGATILGDGGVALIVDVAALLRSSR 694 +V+K + + V GI+G +G + L+V ++ LL R Sbjct: 567 TADLVIKPMTA--ITVPGIAGTARSAEGELVLVVGLSFLLEGCR 608 Score = 61.2 bits (147), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 54/165 (32%), Positives = 82/165 (49%), Gaps = 15/165 (9%) Query: 1 MEKLLLAVNVE--------SP-DPEDLNAVFRAAHSIKGGSSTFGLTDIAEVTHVLESLL 51 +E L LA NVE +P D LNAVFR+ H+IKGG+ L + H+ E+L Sbjct: 10 VEALDLATNVEEHLLTLERNPGDLNTLNAVFRSFHTIKGGAGFMNLPAMVSACHLTENLF 69 Query: 52 DRIRQGQMALTSEHVDAFLAAKDVLKSMLDGHKHGAEVDQEAV--AQVRMLLEALSQGKS 109 D +R GQ+ +T ++A L A + LD +GA+ + + + + +L + G S Sbjct: 70 DALRTGQVPVTPIAIEAALQASGFVADQLDELANGAQPESLSAMPSSLEDILNSAIAGTS 129 Query: 110 SSAA--APKAAAAPVAAV--VGPGGVRRYRLDMPVIADKDADALA 150 ++A AAAP AV VG G+ L + V+ + A LA Sbjct: 130 ETSAPVVETVAAAPTTAVSTVGADGLDWNALYLAVVPNGSAPELA 174 >gi|152980535|ref|YP_001351704.1| CheA chemotaxis protein [Janthinobacterium sp. Marseille] Length = 756 Score = 194 bits (494), Expect = 1e-50, Method: Compositional matrix adjust. Identities = 121/368 (32%), Positives = 200/368 (54%), Gaps = 12/368 (3%) Query: 333 TQAMIEQRVGKLDPMHHEHLLNSVSQLSRNTRDLQESVMSIRMMPMDYVFSRFPRMVRDL 392 Q M+ ++G+L+ SV+ R L + ++ RM P + RMVRD+ Sbjct: 256 CQHMVADQLGELETFDRR----SVNLSQR----LYDEALACRMRPFADGTHGYARMVRDV 307 Query: 393 AHKLGKQVEFVTHGAATELDKGLIERIVDPLTHLVRNSIDHGIELPEARRAAGKGEAGVL 452 H LGK V G AT++D+ ++E++ P+ HL+RN+IDHGIE P+ R+AAGK E G++ Sbjct: 308 GHALGKSVRLEIIGNATQIDRDILEKLEAPIGHLLRNAIDHGIENPQQRKAAGKPEQGLI 367 Query: 453 SLSAEHQGGNIIIEVTDDGGGLNRDKILAKAKQQGMPVTDNLSD---ADVWQLIFEPGFS 509 +L A H G +++ V+DDG G++ D++ A ++ + D ++ A++ + + P FS Sbjct: 368 TLEARHSAGMLLVNVSDDGAGIDLDQLRATIIERKLSNADTVAQLSEAELLEFLLLPSFS 427 Query: 510 TAEQVTDVSGRGVGMDVVKRNILAMGGAVDIRSSKGFGTTISISLPLTLAILDGMSIRIG 569 + VTD+SGRGVG+DVV + + G + I S+ GT + LPLTL+++ + + I Sbjct: 428 LRDTVTDISGRGVGLDVVSDMLKQVRGTIRISSTPQQGTRFQMQLPLTLSVIRSLLVTIN 487 Query: 570 EEVYILPLGYVVESLQPLPQDIKEISGQGQVLRVRGEYLPLIPLYQIFNIEPSFTDPSQG 629 EE Y PL YV +L+ + + GQ Q G + L+ +QI Sbjct: 488 EEPYAFPLAYVNRTLELRRDQLAMLEGQ-QHFTFDGRQIGLVSAHQILQKGELRAKDDLV 546 Query: 630 LVVILESDGKKAALFVDDLIGQQQIVVKNLESNYRKVAGISGATILGDGGVALIVDVAAL 689 VV++ L VDD +G++ +VV+ L++ KV + ++ DG LI+DVA + Sbjct: 547 SVVVIGDHEHTYGLAVDDFLGERMLVVQPLDNRLGKVPNVLAGALMEDGDPVLILDVADM 606 Query: 690 LRSSRQLN 697 +RS +L Sbjct: 607 VRSVEKLT 614 >gi|152981669|ref|YP_001353298.1| chemotaxis related protein [Janthinobacterium sp. Marseille] Length = 806 Score = 99.8 bits (247), Expect = 5e-22, Method: Compositional matrix adjust. Identities = 80/225 (35%), Positives = 117/225 (52%), Gaps = 30/225 (13%) Query: 340 RVGKLDP---MHHEHLLNSVSQLSR-NTRDLQESVM-------SIRMM---PMDYVFSRF 385 R GK+D + +H+ S+ +L NT +L E V ++R++ +D S Sbjct: 530 RGGKVDSYLMIDKKHIQESLHRLENVNTANLHELVAVRNAVRRTLRLLGTERIDETLSGV 589 Query: 386 PRMVRDLAHKLGK---QVE-----FVTHGAATELDKGLIERIVDPLTHLVRNSIDHGIEL 437 + LA +LGK ++E +V H + L K D HL+RN++DHGIE Sbjct: 590 IESMPALAQELGKIAPKIEIKDGGYVVHNQISALLK-------DVFMHLIRNAMDHGIET 642 Query: 438 PEARRAAGKGEAGVLSLSAEHQGGNIIIEVTDDGGGLNRDKILAKAKQQGMP-VTDNLSD 496 PE R A GK EAG +SL + + I + DDG GL +I A +G+ D L D Sbjct: 643 PEVRVALGKPEAGKISLGMDMDEKMLNITLRDDGRGLALKRIRQIALDKGLSDAPDQLDD 702 Query: 497 ADVWQLIFEPGFSTAEQVTDVSGRGVGMDVVKRNILAMGGAVDIR 541 +LI + GFSTA++V++VSGRGVGMD V + G++DIR Sbjct: 703 LAAARLILQAGFSTADKVSEVSGRGVGMDAVLAFVSRENGSIDIR 747 Database: BlastDatabases/707/707 Posted date: Apr 13, 2011 12:58 PM Number of letters in database: 1,221,021 Number of sequences in database: 3697 Lambda K H 0.316 0.134 0.374 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3697 Number of Hits to DB: 1,386,062 Number of extensions: 54379 Number of successful extensions: 263 Number of sequences better than 1.0e-08: 5 Number of HSP's gapped: 249 Number of HSP's successfully gapped: 6 Length of query: 703 Length of database: 1,221,021 Length adjustment: 90 Effective length of query: 613 Effective length of database: 888,291 Effective search space: 544522383 Effective search space used: 544522383 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 133 (55.8 bits)