BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.2956.p
         (168 letters)

Database: BlastDatabases/707/707 
           3697 sequences; 1,221,021 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|152980520|ref|YP_001353784.1| CheW purine-binding chemotaxis ...   280   5e-77
gi|152981613|ref|YP_001354517.1| purine-binding chemotaxis prote...   253   3e-69
gi|152981612|ref|YP_001351771.1| purine-binding chemotaxis prote...   242   8e-66

>gi|152980520|ref|YP_001353784.1| CheW purine-binding chemotaxis
           protein [Janthinobacterium sp. Marseille]
          Length = 163

 Score =  280 bits (715), Expect = 5e-77,   Method: Compositional matrix adjust.
 Identities = 137/150 (91%), Positives = 147/150 (98%)

Query: 19  NGNEFLAFTLGKEEYGIDILKVQEIRGYEAVTRIANSPDFIKGVVNLRGIIVPIVDMRIK 78
           NGNEFLAFTLGKEEYGIDILKVQEIRGYEAVTRIAN+P+F+KGVVNLRGIIVPIVDMRIK
Sbjct: 14  NGNEFLAFTLGKEEYGIDILKVQEIRGYEAVTRIANAPEFVKGVVNLRGIIVPIVDMRIK 73

Query: 79  FQLGEPTYDQFTVVIILNIGGRVVGMVVDSVSDVITLTQEQIKPAPEMGTTFDSDYLIGL 138
           F LGEPTYDQFTVVIILNIGGRVVGMVVDSVSDVITL+ EQIKPAPEMGT F++DYLIGL
Sbjct: 74  FNLGEPTYDQFTVVIILNIGGRVVGMVVDSVSDVITLSPEQIKPAPEMGTAFNTDYLIGL 133

Query: 139 GTLEQRMLILVDIDKLMSSAEMGLIEKLAA 168
           GTL++RMLILVDIDKLMSS+EMGLIEK+AA
Sbjct: 134 GTLDERMLILVDIDKLMSSSEMGLIEKIAA 163


>gi|152981613|ref|YP_001354517.1| purine-binding chemotaxis protein
           CheW [Janthinobacterium sp. Marseille]
          Length = 158

 Score =  253 bits (647), Expect = 3e-69,   Method: Compositional matrix adjust.
 Identities = 124/149 (83%), Positives = 140/149 (93%)

Query: 20  GNEFLAFTLGKEEYGIDILKVQEIRGYEAVTRIANSPDFIKGVVNLRGIIVPIVDMRIKF 79
           G E LAFTLG EEYGIDILKVQEIRGY+AVT+IAN+P+FIKGV+NLRGIIVPIVDMRI F
Sbjct: 10  GTEVLAFTLGSEEYGIDILKVQEIRGYDAVTKIANAPEFIKGVINLRGIIVPIVDMRIMF 69

Query: 80  QLGEPTYDQFTVVIILNIGGRVVGMVVDSVSDVITLTQEQIKPAPEMGTTFDSDYLIGLG 139
           +LG PTYDQFTVVIILNIG RVVG+VVDSVSDVITL  EQIKPAPEMGT+ ++D+LIGLG
Sbjct: 70  KLGAPTYDQFTVVIILNIGNRVVGIVVDSVSDVITLNGEQIKPAPEMGTSMNADFLIGLG 129

Query: 140 TLEQRMLILVDIDKLMSSAEMGLIEKLAA 168
           T+E+RMLIL+DIDKLMSS+EMGL+EKLAA
Sbjct: 130 TIEERMLILLDIDKLMSSSEMGLMEKLAA 158


>gi|152981612|ref|YP_001351771.1| purine-binding chemotaxis protein
           CheW [Janthinobacterium sp. Marseille]
          Length = 164

 Score =  242 bits (618), Expect = 8e-66,   Method: Compositional matrix adjust.
 Identities = 116/147 (78%), Positives = 134/147 (91%)

Query: 22  EFLAFTLGKEEYGIDILKVQEIRGYEAVTRIANSPDFIKGVVNLRGIIVPIVDMRIKFQL 81
           E+LAFTLG EEYG+ I KVQE+RGY+AVT+IAN+P+FIKGVVNLRGIIVPI+DMRIKF L
Sbjct: 18  EYLAFTLGHEEYGVSIQKVQELRGYDAVTQIANAPEFIKGVVNLRGIIVPIIDMRIKFNL 77

Query: 82  GEPTYDQFTVVIILNIGGRVVGMVVDSVSDVITLTQEQIKPAPEMGTTFDSDYLIGLGTL 141
           G PTYDQFTVV+ILNI  RVVGMVVDSVSDVITLT EQIKPAPEMG   D++YL+GLGT+
Sbjct: 78  GTPTYDQFTVVVILNINNRVVGMVVDSVSDVITLTPEQIKPAPEMGGAVDTNYLVGLGTV 137

Query: 142 EQRMLILVDIDKLMSSAEMGLIEKLAA 168
           ++RMLILVDID+LMSS EMGLI++ AA
Sbjct: 138 DERMLILVDIDRLMSSNEMGLIQQHAA 164


  Database: BlastDatabases/707/707
    Posted date:  Apr 13, 2011 12:58 PM
  Number of letters in database: 1,221,021
  Number of sequences in database:  3697
  
Lambda     K      H
   0.319    0.139    0.381 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3697
Number of Hits to DB: 334,536
Number of extensions: 11369
Number of successful extensions: 33
Number of sequences better than 1.0e-08: 3
Number of HSP's gapped: 33
Number of HSP's successfully gapped: 3
Length of query: 168
Length of database: 1,221,021
Length adjustment: 77
Effective length of query: 91
Effective length of database: 936,352
Effective search space: 85208032
Effective search space used: 85208032
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 126 (53.1 bits)