BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.2955.p
         (415 letters)

Database: BlastDatabases/707/707 
           3697 sequences; 1,221,021 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|152979955|ref|YP_001353190.1| hypothetical protein mma_1500 [...   452   e-128

>gi|152979955|ref|YP_001353190.1| hypothetical protein mma_1500
           [Janthinobacterium sp. Marseille]
          Length = 416

 Score =  452 bits (1162), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 226/420 (53%), Positives = 290/420 (69%), Gaps = 9/420 (2%)

Query: 1   MRRPAKRSSSKLSADSQHLVTFAQAIAQASSRLEERAWLKPLDALLNKLLRTGHQGLLDA 60
           MRRP+K +S KLSADSQ L T AQA+ QA+SRLEER W + LD LL KLL+  HQ  +DA
Sbjct: 1   MRRPSKNTSHKLSADSQRLATLAQALIQAASRLEERNWERQLDVLLRKLLKNDHQDSIDA 60

Query: 61  ALDHLFKADLDAYDVLIEAVEAGSESTTLEHDGQDYDVQLLVLPVLAWTRFAIASGPIAG 120
           ALDHLFK + DAYD L+E VEA SES  LEH+G  +D  L+ +P+LAWTRF+IASGPI  
Sbjct: 61  ALDHLFKQESDAYDGLMECVEAASESCQLEHEGVLHDALLVAMPILAWTRFSIASGPIPA 120

Query: 121 DLLSAIGAHLHAHVLATDARLALAPALFSIEQLPRVHADVFALTRQMGQSALKNAPVQMR 180
           +  + + AH HAH+LA + ++ +A ALFSI+QLPR HA+ FA T++M Q+ALK   ++  
Sbjct: 121 EATATLSAHFHAHILAPNTKMVMASALFSIDQLPRTHAETFAFTQRMAQTALKGITLKPP 180

Query: 181 GEQPPTAAFLADTRYVIAAVAVPAGGALFHWQDSEQQSHFSANKAAAFEAWKQQATPLFT 240
            + P TA FLADTRY++A V   AG  LF WQ S         +  A   W  QA P   
Sbjct: 181 TQAPETAPFLADTRYLLAVVTAVAGEPLFRWQVSADL----GERDTALSQWNAQALPNIA 236

Query: 241 RLLPGCSVELLLPQAYFFGCREADKRIRPASIRAADYFLTQTLDIASSELHASIGGFSED 300
           RLLPGC +ELLLP+AYF  CRE DK+IRPASIRAA ++LT TL++ +SEL A IG F E+
Sbjct: 237 RLLPGCGIELLLPEAYFVACREGDKQIRPASIRAAVHYLTHTLNVEASELQAIIGSFGEE 296

Query: 301 -INGQIDEYRIGFSIGDDPTVVYGTVWPLYEQESGEEL---PMMIPAGAGL-LEGLPPSP 355
             +G++DEYRI F+  +DP V+YGTVWPLY +E   EL    + +P+   + ++    SP
Sbjct: 297 STDGRVDEYRISFTRANDPDVLYGTVWPLYGEEDDAELQYRSVEVPSDPVISVDVERKSP 356

Query: 356 LQQILMVLRECGIVHIKHHAERFTMEFCDDCGAPLFPDREGELVHAEMPEDTPPPVEHFH 415
           +++IL +L ECG+V++K H E F MEFCDDCG PL+PD   ELVHAEMPED      H H
Sbjct: 357 IEEILALLEECGVVNVKRHLECFPMEFCDDCGTPLYPDMSAELVHAEMPEDAQVGSTHLH 416


  Database: BlastDatabases/707/707
    Posted date:  Apr 13, 2011 12:58 PM
  Number of letters in database: 1,221,021
  Number of sequences in database:  3697
  
Lambda     K      H
   0.320    0.135    0.406 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3697
Number of Hits to DB: 935,949
Number of extensions: 38546
Number of successful extensions: 132
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 129
Number of HSP's successfully gapped: 1
Length of query: 415
Length of database: 1,221,021
Length adjustment: 86
Effective length of query: 329
Effective length of database: 903,079
Effective search space: 297112991
Effective search space used: 297112991
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 131 (55.1 bits)