BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.2954.p (903 letters) Database: BlastDatabases/707/707 3697 sequences; 1,221,021 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|152980286|ref|YP_001353191.1| aconitate hydratase [Janthinoba... 1627 0.0 gi|152980460|ref|YP_001353862.1| 3-isopropylmalate dehydratase l... 102 1e-22 gi|152980040|ref|YP_001354033.1| isopropylmalate isomerase large... 100 3e-22 >gi|152980286|ref|YP_001353191.1| aconitate hydratase [Janthinobacterium sp. Marseille] Length = 907 Score = 1627 bits (4212), Expect = 0.0, Method: Compositional matrix adjust. Identities = 791/907 (87%), Positives = 855/907 (94%), Gaps = 4/907 (0%) Query: 1 MSRNTLNTLKEFKISGSKKGKFYSLPALQKSLGVNISRLPVSIRIVLESVLRNCDGQKVT 60 MSRNTLNTLKEF ISGS+KG+FYSL AL K LGVN+SRLPVSIRIVLESVLRNCDG+KVT Sbjct: 1 MSRNTLNTLKEFNISGSRKGEFYSLQALGKKLGVNVSRLPVSIRIVLESVLRNCDGKKVT 60 Query: 61 EEHVKQLANWGAKAARVDEIPFVVARVVLQDFTGVPLLADLAAMRNVASKLGKNPKNIEP 120 EEH++QLANW A+R DEIPFVVARVVLQDFTGVPLLADLAAMR VA K+GKNPKNIEP Sbjct: 61 EEHIRQLANWSPNASRTDEIPFVVARVVLQDFTGVPLLADLAAMRGVAEKMGKNPKNIEP 120 Query: 121 LVPVDLVVDHSVQIDHFREKKALDLNMKLEFSRNNERYQFMKWGMQAFDTFGVVPPGFGI 180 LVPVDLVVDHS+QIDHFR+K ALDLNMKLEF RNNERYQFMKWGMQAFDTFGVVPPGFGI Sbjct: 121 LVPVDLVVDHSIQIDHFRQKNALDLNMKLEFQRNNERYQFMKWGMQAFDTFGVVPPGFGI 180 Query: 181 VHQVNLEYLARGVHNKTGVYYPDTLVGTDSHTTMINGIGVVGWGVGGIEAEAGMLGQPVY 240 VHQVNLEYLARGVH K VYYPDTLVGTDSHTTMINGIGVVGWGVGGIEAEAGMLGQPVY Sbjct: 181 VHQVNLEYLARGVHKKDSVYYPDTLVGTDSHTTMINGIGVVGWGVGGIEAEAGMLGQPVY 240 Query: 241 FLTPDVVGVNLTGALREGVTATDLVLTITELLRQTKVVGKFVEFFGEGTESLSLTDRATI 300 FLTPDVVGVNLTG LREGVTATDLVLTITE+LR+ KVVGKFVEFFGEGTESLSLTDRATI Sbjct: 241 FLTPDVVGVNLTGQLREGVTATDLVLTITEMLRKEKVVGKFVEFFGEGTESLSLTDRATI 300 Query: 301 ANMAPEYGATMGFFPVDDATIAYFKGTGRTKAEIDAFEAYFKAQGLYGVPKAGQIDYTQE 360 ANMAPEYGATMGFFPVDDATI YFKGTGRTKAEIDAFE+YFKAQGLYGVPK+G+IDYT Sbjct: 301 ANMAPEYGATMGFFPVDDATIDYFKGTGRTKAEIDAFESYFKAQGLYGVPKSGEIDYTHV 360 Query: 361 VSLDLGTVAPSLAGPKRPQDRIEIGNVKSTFSDLFTKPTAENGFNKKAEDLGASYKNADG 420 V+LDLG+VAPSLAGPKRPQDRIEIGNVK F++LF KPTAENGFNKK EDL A+Y N+DG Sbjct: 361 VALDLGSVAPSLAGPKRPQDRIEIGNVKHNFAELFAKPTAENGFNKKIEDLDATYTNSDG 420 Query: 421 VDVHNGDVLIAAITSCTNTSNPSVLLAAGLLAKKAVEAGLKVAPHIKTSLAPGSRVVTKY 480 V V NGDVLIAAITSCTNTSNPSVLL AGLLAKKAVEAGLKV+PHIKTSLAPGSRVVT+Y Sbjct: 421 VKVKNGDVLIAAITSCTNTSNPSVLLTAGLLAKKAVEAGLKVSPHIKTSLAPGSRVVTEY 480 Query: 481 LEAAGLLPYLEKLGFGVTAYGCTTCIGNAGDLTPAMNEAIVKNDVVAAAVLSGNRNFEAR 540 LEAAGLLPYLEKLGFGVTAYGCTTCIGNAGDLTPAMNEAIV++D+VA+AVLSGNRNFEAR Sbjct: 481 LEAAGLLPYLEKLGFGVTAYGCTTCIGNAGDLTPAMNEAIVQHDIVASAVLSGNRNFEAR 540 Query: 541 IHPNIRANFLASPPLVVAYAIAGNVTRDLMTEPVGKGKGG----KPVYLGDIWPTSQEIE 596 IHPNIR+NFLASPPLVVAYAIAGN+TRDLMTEPVG+GKG + VYLGDIWPTSQE+ Sbjct: 541 IHPNIRSNFLASPPLVVAYAIAGNMTRDLMTEPVGRGKGADGKTRDVYLGDIWPTSQEVA 600 Query: 597 KLLKFAMNAKTFKENYADVKGAPGKLWEAIKGVAKGEVYNWPSSTYIAEPPFFENFSEEP 656 KL+KFAMNAKTFK+NYA VK APGKLWE IKGVA+G+VY+WP+STYIAEPPFF +F+ EP Sbjct: 601 KLMKFAMNAKTFKDNYAQVKTAPGKLWEQIKGVAEGQVYDWPTSTYIAEPPFFNDFTMEP 660 Query: 657 QAAATGISGARALGVFGDSITTDHISPAGSIKESSPAGKWLQANGVLKADFNSYGSRRGN 716 +AAATGI+ ARALGVFGDSITTDHISPAG+IK+SSPAGK+L GV+KADFNSYGSRRGN Sbjct: 661 KAAATGITAARALGVFGDSITTDHISPAGAIKDSSPAGKYLSEKGVMKADFNSYGSRRGN 720 Query: 717 HEIMMRGTFANVRIKNLMIPAKEDGSRVEGGITIHQPSGEEMSIYDAAMKYVAEGTPTMV 776 HEIMMRGTFANVRIKNLMIPAK DGSRVEGG+T+ QPSGE+MSIYDAAM+YV+EGTPTMV Sbjct: 721 HEIMMRGTFANVRIKNLMIPAKPDGSRVEGGVTLFQPSGEQMSIYDAAMRYVSEGTPTMV 780 Query: 777 FGGEEYGTGSSRDWAAKGTQLLGVKAVIARSFERIHRSNLVGMGVLPLQFLGNDSVQSLG 836 F GEEYGTGSSRDWAAKGTQLLGVKAVIARS+ERIHRSNLVGMGVLPLQFLG+DS+ +LG Sbjct: 781 FAGEEYGTGSSRDWAAKGTQLLGVKAVIARSYERIHRSNLVGMGVLPLQFLGDDSMTTLG 840 Query: 837 ITGEESFDLKGLEGEIKPQQEATLVIHRKNGQTQEVKLLLRIDTPIEVDYYKHGGILPFV 896 ITG+E+FDLKGLEG ++PQQE TLVIHR NG++++VK+LLRIDTPIEVDYYKHGGILPFV Sbjct: 841 ITGDETFDLKGLEGNLRPQQEVTLVIHRANGESRDVKVLLRIDTPIEVDYYKHGGILPFV 900 Query: 897 LRQLLAA 903 LRQLLAA Sbjct: 901 LRQLLAA 907 >gi|152980460|ref|YP_001353862.1| 3-isopropylmalate dehydratase large subunit [Janthinobacterium sp. Marseille] Length = 468 Score = 102 bits (253), Expect = 1e-22, Method: Compositional matrix adjust. Identities = 114/389 (29%), Positives = 161/389 (41%), Gaps = 38/389 (9%) Query: 179 GIVHQVNLEYLARGVHNKTGVYYPD-TLVGTDSHTTMINGIGVVGWGVGGIEAEAGMLGQ 237 GIVH + E G P T+V DSHT+ G + G+G E E + Q Sbjct: 106 GIVHVIGPE---------QGATLPGMTVVCGDSHTSTHGAFGCLAHGIGTSEVEHVLATQ 156 Query: 238 PVYFLTPDVVGVNLTGALREGVTATDLVLTITELLRQTKVVGKFVEFFGEGTESLSLTDR 297 + + V + GAL +GVTA D+VL + + G +EF G SLS+ R Sbjct: 157 TLLAQKSKAMLVQVDGALPDGVTAKDIVLAVIGKIGTAGGTGYAIEFAGSTIRSLSMEGR 216 Query: 298 ATIANMAPEYGATMGFFPVDDATIAYFKGTGRTKAEIDAFEAYFKAQGLYGVPKAGQIDY 357 TI NMA E GA G VDD TI Y KG + A + L+ A + Sbjct: 217 MTICNMAIEAGARAGMVAVDDITINYVKGRPLSPVGPHWDRAVEYWRTLHSDAGA---KF 273 Query: 358 TQEVSLDLGTVAPSLAGPKRPQDRIEI-GNVKSTFSDLFTKPTAENGFNKKAEDLGASYK 416 V+L+ + P ++ P+ + + G V D PT +G +KA A Sbjct: 274 DLVVTLNAAEIKPQVSWGTSPEMVVAVDGRVPD--PDKEKDPTKRDGM-EKALIYMALKP 330 Query: 417 NADGVDVHNGDVLIAAITSCTNTSNPSVLLAAGLLAKKAVEAGLKVAPHIKTSLAPGSRV 476 N D+ V I SCTN+ + AA ++ K + +K+A + PGS + Sbjct: 331 NTPITDIRIDKVFIG---SCTNSRIEDLRAAAAVVRGKYRASNVKLA-----MVVPGSGL 382 Query: 477 VTKYLEAAGLLPYLEKLGFGVTAYGCTTCIG-NAGDLTPAMNEAIVKNDVVAAAVLSGNR 535 V + E GL + GF GC+ C+ NA L P A + NR Sbjct: 383 VKEQAEREGLDKIFKAAGFEWREPGCSMCLAMNADRLEPGERCAS-----------TSNR 431 Query: 536 NFEARIHPNIRANFLASPPLVVAYAIAGN 564 NFE R R + L SP + A I G+ Sbjct: 432 NFEGRQGAGGRTH-LVSPAMAAAAGIEGH 459 >gi|152980040|ref|YP_001354033.1| isopropylmalate isomerase large subunit [Janthinobacterium sp. Marseille] Length = 468 Score = 100 bits (250), Expect = 3e-22, Method: Compositional matrix adjust. Identities = 108/368 (29%), Positives = 154/368 (41%), Gaps = 39/368 (10%) Query: 209 DSHTTMINGIGVVGWGVGGIEAEAGMLGQPVYFLTPDVVGVNLTGALREGVTATDLVLTI 268 DSHTT +G +G+G+G E E + Q + + D + + + G L G + DLVL I Sbjct: 132 DSHTTTYGALGALGFGIGTSEVEHILATQTLVYRLADNMRIRVDGELPVGTSVKDLVLLI 191 Query: 269 TELLRQTKVVGKFVEFFGEGTESLSLTDRATIANMAPEYGATMGFFPVDDATIAYFKGTG 328 + G VEF G +LS R T+ NMA E GA D T AY K Sbjct: 192 ISRIGAQGARGYAVEFCGSTIAALSAEARMTLCNMAVEAGARAALIRPDATTFAYIKAHA 251 Query: 329 RTKAEIDAFEAYFKAQGLYGVPKAG-QIDYTQEVSLDLGTVAPSLAGPKRPQDRIEI-GN 386 E +A Q LY A ++D+ D VAP + P I + G+ Sbjct: 252 TDLDEAAYAQAQQDWQTLYSDEDAAFEVDH----QFDAREVAPYVTWGTSPDQAIPVNGH 307 Query: 387 VKSTFSDLFTKPTAENGFNKKAEDLGASYKNADGVDVHNGDVLIAAITSCTNTSNPSVLL 446 + TA+N NK +G S G + + I SCTN + + Sbjct: 308 IPD---------TAQND-NKALHYMGLSA----GASLLGLPIERVFIGSCTNGRIEDLRI 353 Query: 447 AAGLLAKKAVEAGLKVAPHIKTSLAPGSRVVTKYLEAAGLLPYLEKLGFGVTAYGCTTCI 506 AAG++ AG VA ++ + PGS V + E GL GF GC+ C+ Sbjct: 354 AAGII------AGQHVANGVRAMVVPGSGAVRRQAEQEGLADIFIAAGFEWRQPGCSMCL 407 Query: 507 GNAGDLTPAMNEAIVKNDVVAAAVLSGNRNFEARIHPNIRANFLASPPLVVAYAIAGNVT 566 AMN+ ++ A+ + NRNFE R R + + SP + A AI G ++ Sbjct: 408 --------AMNDDVLTPGERCAS--TTNRNFEGRQGREGRTHLM-SPAMAAAAAIRGCIS 456 Query: 567 --RDLMTE 572 RDL E Sbjct: 457 DVRDLAKE 464 Database: BlastDatabases/707/707 Posted date: Apr 13, 2011 12:58 PM Number of letters in database: 1,221,021 Number of sequences in database: 3697 Lambda K H 0.316 0.135 0.391 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3697 Number of Hits to DB: 2,032,198 Number of extensions: 85781 Number of successful extensions: 230 Number of sequences better than 1.0e-08: 3 Number of HSP's gapped: 227 Number of HSP's successfully gapped: 3 Length of query: 903 Length of database: 1,221,021 Length adjustment: 92 Effective length of query: 811 Effective length of database: 880,897 Effective search space: 714407467 Effective search space used: 714407467 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 134 (56.2 bits)