BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.2953.p
         (181 letters)

Database: BlastDatabases/707/707 
           3697 sequences; 1,221,021 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|152980506|ref|YP_001353192.1| hypothetical protein mma_1502 [...   151   2e-38

>gi|152980506|ref|YP_001353192.1| hypothetical protein mma_1502
           [Janthinobacterium sp. Marseille]
          Length = 165

 Score =  151 bits (382), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 84/166 (50%), Positives = 105/166 (63%), Gaps = 4/166 (2%)

Query: 1   MKKHLSLLALLGALFAVAGIAPAHADTDSTHTTKKKVVKKAHTKKAAAAAAAPAAKMPFS 60
           MKK L    L+G   A   IAPA A + S    KK   K      A AAAAA  A    +
Sbjct: 1   MKKLLCAFLLIGMSSA---IAPAFAQSTSKEAAKKPATKTVKKAPAKAAAAATPAAAAAA 57

Query: 61  SDAEDDD-SEPELSGTQSADFQCEMGNKLTIWKNDADDKHIAIRWNKRIHRLTRVATTTG 119
            D + +D  E  + G+    + CE+GNK+T + N  DDK++AIRW  ++HRL R+ T+TG
Sbjct: 58  GDDDQEDLGEANIEGSTVTHYNCELGNKITTYNNVGDDKYMAIRWQNKVHRLGRIGTSTG 117

Query: 120 ANRFENHKMGLVWIGIPAKGLLLDSKKGQQLANECKNADQIKAAAA 165
           ANRFEN K GLVWI IP+K +LLDSKKGQQLANEC+N DQ+KA AA
Sbjct: 118 ANRFENRKAGLVWINIPSKAMLLDSKKGQQLANECRNPDQVKAQAA 163


  Database: BlastDatabases/707/707
    Posted date:  Apr 13, 2011 12:58 PM
  Number of letters in database: 1,221,021
  Number of sequences in database:  3697
  
Lambda     K      H
   0.313    0.124    0.356 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3697
Number of Hits to DB: 219,077
Number of extensions: 7305
Number of successful extensions: 11
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 11
Number of HSP's successfully gapped: 1
Length of query: 181
Length of database: 1,221,021
Length adjustment: 78
Effective length of query: 103
Effective length of database: 932,655
Effective search space: 96063465
Effective search space used: 96063465
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 126 (53.1 bits)