BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.2952.p
         (333 letters)

Database: BlastDatabases/707/707 
           3697 sequences; 1,221,021 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|152980550|ref|YP_001353193.1| citrate lyase beta chain [Janth...   449   e-127

>gi|152980550|ref|YP_001353193.1| citrate lyase beta chain
           [Janthinobacterium sp. Marseille]
          Length = 323

 Score =  449 bits (1155), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 215/316 (68%), Positives = 249/316 (78%)

Query: 1   MHPSQVLFPGAQQPVSLPVCDHYAGSEKLMRKSMALQQELGPVFDITFDCEDGAAAGNEA 60
           MHPS+VLF G   PVS+P CDHYAGSEKLMRKS+ALQQELGPVFDITFDCEDGAA GNE 
Sbjct: 1   MHPSEVLFQGKCPPVSIPACDHYAGSEKLMRKSLALQQELGPVFDITFDCEDGAAHGNEK 60

Query: 61  AHAELVAALIASPDNVHRRIGARVHDVGHAHFEQDVATICGAAARELAYVMLPKPEGVED 120
            HA L+  L+A  +N   RIGARVHDV    FEQD+  I   AA++LAY+++PK + + D
Sbjct: 61  DHAHLLGTLVAGEENQFARIGARVHDVTSEFFEQDIEIILQHAAQKLAYLVVPKVDSLAD 120

Query: 121 VLRALESINRAARAAGRSYLPVQVLIETHGALADANKIAALPQVQSLSFGVMDFVSAHYG 180
            + A+  +NR A   GR  LPV VLIETHGALAD   IAALPQV+ LSFGVMDFVSAHYG
Sbjct: 121 TVNAIALVNRHAHKQGREQLPVHVLIETHGALADVFAIAALPQVECLSFGVMDFVSAHYG 180

Query: 181 AIPGGAMRSPGQFDHPLVRRAKLEIAAVCHAHGKVPSHNVSTDIKNPAAVADDARRAAQE 240
           AIPG AMRSPGQF HPLV RAKLEIAA CHAHGK PSHNV+T+I + + VA DA RAA E
Sbjct: 181 AIPGNAMRSPGQFTHPLVARAKLEIAAACHAHGKTPSHNVTTEINDTSVVASDAHRAAAE 240

Query: 241 FGYTRMWSIHPDQIRPIVQAMSPATEEAELAAQILLKAQAVQWGPIQHLGNLHDRASYRY 300
           FGYTRMWSIHP+QI+PI+++ +P   E   AA+IL +A A+QWGPIQH G LHDRASYRY
Sbjct: 241 FGYTRMWSIHPNQIKPILKSFAPRLSEVNEAAEILAQAHAIQWGPIQHNGKLHDRASYRY 300

Query: 301 YWSILQRAHATGIALP 316
           YW+ILQRA A+G+ LP
Sbjct: 301 YWTILQRAQASGLTLP 316


  Database: BlastDatabases/707/707
    Posted date:  Apr 13, 2011 12:58 PM
  Number of letters in database: 1,221,021
  Number of sequences in database:  3697
  
Lambda     K      H
   0.319    0.132    0.400 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3697
Number of Hits to DB: 734,829
Number of extensions: 26918
Number of successful extensions: 84
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 84
Number of HSP's successfully gapped: 1
Length of query: 333
Length of database: 1,221,021
Length adjustment: 84
Effective length of query: 249
Effective length of database: 910,473
Effective search space: 226707777
Effective search space used: 226707777
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 130 (54.7 bits)