BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.2951.p
         (324 letters)

Database: BlastDatabases/707/707 
           3697 sequences; 1,221,021 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|152980043|ref|YP_001353194.1| malate dehydrogenase [Janthinob...   601   e-173

>gi|152980043|ref|YP_001353194.1| malate dehydrogenase
           [Janthinobacterium sp. Marseille]
          Length = 329

 Score =  601 bits (1549), Expect = e-173,   Method: Compositional matrix adjust.
 Identities = 299/324 (92%), Positives = 313/324 (96%)

Query: 1   MRVAVTGAAGQIGYSLLFRIANGDLLGKDQPVILQLLEIPDEKAQKALKGVIMEIDDCAF 60
           MRVAVTGAAGQIGYSLLFRIANGDLLGKDQPVILQLLEI DEKAQKALKGVIMEIDDCAF
Sbjct: 6   MRVAVTGAAGQIGYSLLFRIANGDLLGKDQPVILQLLEIADEKAQKALKGVIMEIDDCAF 65

Query: 61  PLLAGVTAHSDPMTAFKDADIALLVGARPRGPGMERKDLLEANAQIFTVQGKALDAVASR 120
           PLLAGVTAHSDPMTAFKDAD+ALLVGARPRGPGMERKDLLEANAQIFTVQGKALDAVASR
Sbjct: 66  PLLAGVTAHSDPMTAFKDADVALLVGARPRGPGMERKDLLEANAQIFTVQGKALDAVASR 125

Query: 121 NVKVLVVGNPANTNAYIAMKSAPNLPAKNFTAMLRLDHNRALSQVAAKIGKPVSAIEKLC 180
           NVKVLVVGNPANTNAYIAMKSAPNLPAKNFTAMLRLDHNRALSQ+AAKI KPV++IEKL 
Sbjct: 126 NVKVLVVGNPANTNAYIAMKSAPNLPAKNFTAMLRLDHNRALSQIAAKISKPVTSIEKLT 185

Query: 181 VWGNHSPTMYADYRFATADGASVKDTINDQEWNKNVFLPTVGKRGAAIIEARGLSSAASA 240
           VWGNHSPTMY DYRFATADG SVK+ IND+ WNK+VFLPTVGKRGAAII+ARG+SSAASA
Sbjct: 186 VWGNHSPTMYPDYRFATADGKSVKEAINDEVWNKDVFLPTVGKRGAAIIDARGVSSAASA 245

Query: 241 ANAAIDHVRDWVLGTNGKWTTMGIPSDGSYGIPEGTMFGFPVTTENGEYKIVQGLEIDEF 300
           ANAAIDHVRDWVLGTNGKW TMGIPSDGSYGIP+ T+FGFPVT ENGEYKIVQGLEID F
Sbjct: 246 ANAAIDHVRDWVLGTNGKWVTMGIPSDGSYGIPKDTIFGFPVTVENGEYKIVQGLEIDAF 305

Query: 301 SQERINITLKELMEEREGVKHLVG 324
           SQERIN+TLKEL+EEREGVKHL+G
Sbjct: 306 SQERINLTLKELLEEREGVKHLLG 329


  Database: BlastDatabases/707/707
    Posted date:  Apr 13, 2011 12:58 PM
  Number of letters in database: 1,221,021
  Number of sequences in database:  3697
  
Lambda     K      H
   0.317    0.134    0.388 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3697
Number of Hits to DB: 759,272
Number of extensions: 31065
Number of successful extensions: 87
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 87
Number of HSP's successfully gapped: 1
Length of query: 324
Length of database: 1,221,021
Length adjustment: 83
Effective length of query: 241
Effective length of database: 914,170
Effective search space: 220314970
Effective search space used: 220314970
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 129 (54.3 bits)