BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.2950.p (267 letters) Database: BlastDatabases/707/707 3697 sequences; 1,221,021 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|152980741|ref|YP_001353195.1| GntR family transcriptional reg... 379 e-106 gi|152981522|ref|YP_001352980.1| GntR family transcriptional reg... 163 9e-42 >gi|152980741|ref|YP_001353195.1| GntR family transcriptional regulator [Janthinobacterium sp. Marseille] Length = 284 Score = 379 bits (972), Expect = e-106, Method: Compositional matrix adjust. Identities = 176/259 (67%), Positives = 217/259 (83%), Gaps = 4/259 (1%) Query: 9 SILPNSNNADAQAAGAGAASPAPTFSPLYQQIKALIMQRLEAGEWKPGELIPSEVELGSR 68 + LPN+N A AG A+P+PTFSPLYQQIKALI + L++GEW+PGELIPSEVEL +R Sbjct: 30 TTLPNNN----AAGSAGGATPSPTFSPLYQQIKALITRSLQSGEWRPGELIPSEVELATR 85 Query: 69 FKVSQGTVRKAIDELAAENLVVRRQGKGTFVATHHETQAQFRFLRLMADSEEPQRPENKI 128 FKVSQGTVRKAIDEL+AENLVVRRQGKGTFVATHHE +AQFRFLRL D EP P+N I Sbjct: 86 FKVSQGTVRKAIDELSAENLVVRRQGKGTFVATHHEARAQFRFLRLKPDVGEPLYPDNTI 145 Query: 129 IEVKRVRASAEVARQLDMKSGDSVIFIRRVKSFNGAPIILEDIWLPGAIFKGLTAERLVE 188 I+ KR+RA A++ARQLD+K+GDSV+F++RV+SF+GAP ILE++WLPG IFKGL+ ER+++ Sbjct: 146 IDAKRLRAPADIARQLDIKTGDSVVFLKRVQSFDGAPTILEELWLPGTIFKGLSVERVLQ 205 Query: 189 YRGPLYGLFESEFGTRMIRAEERIRAVGADQDAAEFLGVAPQTPLLSVERASFTYGDKPV 248 Y+GP+Y L E+EFGT+MIRA E I+AV ADQ A+ L + TPLLSV R SFTYGDKPV Sbjct: 206 YKGPMYALLETEFGTQMIRAVENIKAVVADQVTADLLSLPLNTPLLSVTRVSFTYGDKPV 265 Query: 249 EMRRGLYLTTNHHYQSELS 267 E+RR Y+T NHHY++EL+ Sbjct: 266 EVRRSYYVTNNHHYRNELN 284 >gi|152981522|ref|YP_001352980.1| GntR family transcriptional regulator [Janthinobacterium sp. Marseille] Length = 245 Score = 163 bits (413), Expect = 9e-42, Method: Compositional matrix adjust. Identities = 84/236 (35%), Positives = 132/236 (55%) Query: 27 ASPAPTFSPLYQQIKALIMQRLEAGEWKPGELIPSEVELGSRFKVSQGTVRKAIDELAAE 86 ++ +P LY+++K ++ L + EW G+ IPSE +L RF VS GT+RKAIDEL AE Sbjct: 5 SANSPVGVTLYKEVKRQMLASLASSEWTSGDAIPSEKQLCQRFGVSIGTLRKAIDELVAE 64 Query: 87 NLVVRRQGKGTFVATHHETQAQFRFLRLMADSEEPQRPENKIIEVKRVRASAEVARQLDM 146 N+++R QG+GTFVA H+ FRF ++ + P+ + + A A +L + Sbjct: 65 NILIRHQGRGTFVAVHNRGPHLFRFFNVVRHDGQKSYPQLTLNSFVKTSADELAAEKLGI 124 Query: 147 KSGDSVIFIRRVKSFNGAPIILEDIWLPGAIFKGLTAERLVEYRGPLYGLFESEFGTRMI 206 G V V+S N +++++I LP +F G+T +L E LY L++ +G +I Sbjct: 125 AVGSKVFQFVNVRSLNDEAVLVDEITLPEELFPGMTEAQLRERPSTLYNLYQVSYGINVI 184 Query: 207 RAEERIRAVGADQDAAEFLGVAPQTPLLSVERASFTYGDKPVEMRRGLYLTTNHHY 262 R EER+RA A A+ L +A PLL + R +F+Y ++P+E R T + Y Sbjct: 185 RIEERVRASLASAAHAKLLNIATGAPLLKIYRVAFSYNNQPIEFRTSYVNTERYEY 240 Database: BlastDatabases/707/707 Posted date: Apr 13, 2011 12:58 PM Number of letters in database: 1,221,021 Number of sequences in database: 3697 Lambda K H 0.318 0.134 0.376 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3697 Number of Hits to DB: 531,712 Number of extensions: 20090 Number of successful extensions: 68 Number of sequences better than 1.0e-08: 2 Number of HSP's gapped: 68 Number of HSP's successfully gapped: 2 Length of query: 267 Length of database: 1,221,021 Length adjustment: 82 Effective length of query: 185 Effective length of database: 917,867 Effective search space: 169805395 Effective search space used: 169805395 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 129 (54.3 bits)