BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.2949.p
         (136 letters)

Database: BlastDatabases/707/707 
           3697 sequences; 1,221,021 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|152979988|ref|YP_001353196.1| succinate dehydrogenase cytochr...   154   2e-39

>gi|152979988|ref|YP_001353196.1| succinate dehydrogenase cytochrome
           b-556 subunit [Janthinobacterium sp. Marseille]
          Length = 136

 Score =  154 bits (389), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 85/136 (62%), Positives = 109/136 (80%)

Query: 1   MSEAAKPQRPQFRNIHLTQIAGYRMPLAAIVSIMHRISGLFLFLMLPFILFLLDSSLLSE 60
           MS++ K  + +FRNI++T +  YR PLAAI SI+HR SG  +FL+LPFILFLLD SLLSE
Sbjct: 1   MSDSLKTGKREFRNINVTDLLRYRFPLAAIQSILHRASGALIFLLLPFILFLLDKSLLSE 60

Query: 61  GTFAYLKGLASGWFVKLVILALSWAYLHHFCAGIRHLIMDNHIGLDKDSARKSSATVLVV 120
            +F + KG+AS WF+KL+ILAL+WAYLHHFCAGIRHL+MD H+G+DK + +KS+  V  +
Sbjct: 61  ISFEHFKGIASHWFIKLIILALAWAYLHHFCAGIRHLLMDVHVGVDKVAGKKSATIVFAI 120

Query: 121 SITLMVLVALKLFGAF 136
           S+ L  LVALKLFGAF
Sbjct: 121 SLPLTALVALKLFGAF 136


  Database: BlastDatabases/707/707
    Posted date:  Apr 13, 2011 12:58 PM
  Number of letters in database: 1,221,021
  Number of sequences in database:  3697
  
Lambda     K      H
   0.332    0.142    0.428 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3697
Number of Hits to DB: 243,308
Number of extensions: 6844
Number of successful extensions: 24
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 24
Number of HSP's successfully gapped: 1
Length of query: 136
Length of database: 1,221,021
Length adjustment: 74
Effective length of query: 62
Effective length of database: 947,443
Effective search space: 58741466
Effective search space used: 58741466
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (22.0 bits)
S2: 125 (52.8 bits)