BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.2947.p (592 letters) Database: BlastDatabases/707/707 3697 sequences; 1,221,021 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|152980484|ref|YP_001353198.1| succinate dehydrogenase flavopr... 1099 0.0 gi|152979896|ref|YP_001353687.1| L-aspartate oxidase [Janthinoba... 256 3e-69 >gi|152980484|ref|YP_001353198.1| succinate dehydrogenase flavoprotein subunit [Janthinobacterium sp. Marseille] Length = 592 Score = 1099 bits (2843), Expect = 0.0, Method: Compositional matrix adjust. Identities = 518/592 (87%), Positives = 560/592 (94%) Query: 1 VAAIKSAITTRRFDAVIVGAGGSGMRASLQLAEAGLNVAVLSKVFPTRSHTVAAQGGIGA 60 +AAIK++I +R FDA+IVGAGGSGMRASLQLAEAGLNVAVLSKVFPTRSHTVAAQGGIGA Sbjct: 1 MAAIKTSIPSRHFDAIIVGAGGSGMRASLQLAEAGLNVAVLSKVFPTRSHTVAAQGGIGA 60 Query: 61 SLGNMSEDNWYWHMFDTVKGSDYLGDQDAIEFMCREAPKAVYELEHFGMPFDRNPDGTIY 120 SLGNM+EDNWYWHMFDTVKGSDYLGDQDAIEFMCREAPK VYELEHFGMPFDRN DGTIY Sbjct: 61 SLGNMAEDNWYWHMFDTVKGSDYLGDQDAIEFMCREAPKVVYELEHFGMPFDRNSDGTIY 120 Query: 121 QRPFGGHTANLGEKPVQRACAAADRTGHALLHTLYQRNVRAKTHFFVEWMALDLIRNEEG 180 QRPFGGHTAN GEKPVQRACAAADRTGHALLHTLYQRNVRA+THFFVEWMA+DL+R+ +G Sbjct: 121 QRPFGGHTANFGEKPVQRACAAADRTGHALLHTLYQRNVRARTHFFVEWMAIDLMRDADG 180 Query: 181 DVLGVVALEMETGEIMMLHAKTTLFATGGAGRIWAASTNAFINTGDGMGMAARAGLPLQD 240 DV+GVVALEMETG++MML AKTTLFATGGAGRIWAASTNAFINTGDGMGMAARAGLPL+D Sbjct: 181 DVIGVVALEMETGDVMMLEAKTTLFATGGAGRIWAASTNAFINTGDGMGMAARAGLPLED 240 Query: 241 MEFWQFHPTGVAGAGVLITEGVRGEGGILINSNGERFMERYAPTLKDLAPRDFVSRSMDQ 300 MEFWQFHPTGVAGAGVLITEGVRGEGGIL+NS GERFMERYAPTLKDLAPRDFVSRSMDQ Sbjct: 241 MEFWQFHPTGVAGAGVLITEGVRGEGGILVNSQGERFMERYAPTLKDLAPRDFVSRSMDQ 300 Query: 301 EIKEGRGVGPHKDHVLLDLRHIGADTIKKRLPSILEIAHKFANVDATKEPIPVVPTIHYQ 360 EIKEGRG GP KDHV+LDLRHIGA+TI+KRLPSILEIAHKFANVDAT+EPIPVVPTIHYQ Sbjct: 301 EIKEGRGCGPLKDHVMLDLRHIGAETIQKRLPSILEIAHKFANVDATREPIPVVPTIHYQ 360 Query: 361 MGGIPTNVHGQVVAPKGGSMKEVVQGMYAIGECACVSVHGANRLGTNSLLDLVVFGRAAG 420 MGGIPTN+HGQVV PK G+ VV G+YAIGECACVSVHGANRLGTNSLLDL+VFGRAAG Sbjct: 361 MGGIPTNIHGQVVEPKNGNPNHVVNGLYAIGECACVSVHGANRLGTNSLLDLLVFGRAAG 420 Query: 421 NHIVGTRLQDQSHKPIPAGALDRSLERIAHLESSTGSERVQDVANDIRATMQKYCGVFRT 480 NHIV + L+ + HKP+PA A D +L R+AHLE+STG ERVQDVANDIR+TMQ+YCGVFRT Sbjct: 421 NHIVQSHLKQREHKPLPADAADLALSRLAHLENSTGGERVQDVANDIRSTMQQYCGVFRT 480 Query: 481 DALLQEGYKKIMELDERRKHVSFKDKSKVFNTARVEALELDNLIETAKATITSAAARKES 540 D LLQ GYKKIMELDERRKHVSFKDKS+VFNTAR+EALELDNLIETAKATITSAAARKES Sbjct: 481 DELLQTGYKKIMELDERRKHVSFKDKSRVFNTARIEALELDNLIETAKATITSAAARKES 540 Query: 541 RGAHAHSDYEQRDDVNWLKHTLWFSEGNRLDYKPVNMQPLTVETFKPKARTF 592 RGAHAH D+E+RDD NW+KHTL++SEGNRLDYKPV +PLTV+TFKPK RTF Sbjct: 541 RGAHAHRDFEKRDDENWMKHTLFYSEGNRLDYKPVVTKPLTVDTFKPKPRTF 592 >gi|152979896|ref|YP_001353687.1| L-aspartate oxidase [Janthinobacterium sp. Marseille] Length = 534 Score = 256 bits (654), Expect = 3e-69, Method: Compositional matrix adjust. Identities = 193/563 (34%), Positives = 292/563 (51%), Gaps = 73/563 (12%) Query: 12 RFDAVIVGAGGSGMRASLQLAEAGLNVAVLSKVFPTRSHTVAAQGGIGASLGNMSEDNWY 71 +FD IVG+G +G+ +L LAE VAV+SK + AQGGI A L S D+ Sbjct: 2 KFDVAIVGSGLAGLSVALHLAET-RKVAVISKRALLDGASSWAQGGIAAVLD--SHDSVD 58 Query: 72 WHMFDTVKGSDYLGDQDAIEFMCREAPKAVYELEHFGMPFDRNPDGTIYQRPFGGHTANL 131 H+ DT+ L D+ A F+ +A+ L G+PF +P + G H Sbjct: 59 EHVADTLVAGGGLCDEAATRFIVEHGREAIEWLIKQGVPFTPDPTAEL-----GFHLTRE 113 Query: 132 GEKPVQRACAAADRTGHALLHTLYQRNVRAKTHFFV--EWMALDLIRNEEGD-------V 182 G +R AAD TGHA+ TL Q+ VRA + + A+D+I ++ D Sbjct: 114 GGHGQRRIIHAADATGHAVQVTLEQK-VRAHPNITLLEHHYAIDVITADKLDQKKNGPRC 172 Query: 183 LGVVALEMETGEIMMLHAKTTLFATGGAGRIWAASTNAFINTGDGMGMAARAGLPLQDME 242 LG+ ++++G+++ + A+ T+ ATGGAG+++ +TN TGDG+ MA RAG + +ME Sbjct: 173 LGLYVQDVKSGKVITIAAEHTVLATGGAGKVYLYTTNPDTATGDGIAMAWRAGCRIANME 232 Query: 243 FWQFHPTGV---AGAGVLITEGVRGEGGILI------NSNGERFMERYAPTLKDLAPRDF 293 F QFHPT + LITE VRGEGG+L G+RFM + +LAPRD Sbjct: 233 FIQFHPTCLYHPYAKSFLITEAVRGEGGVLKLPASAGRDGGKRFMPAHDER-AELAPRDI 291 Query: 294 VSRSMDQEIKEGRGVGPHKDHVLLDLRHIGADTIKKRLPSILEIAHKFANVDATKEPIPV 353 V+R++D E+K+ RG+ D+V LD+ + +K+ P+I+ + +D TK+PIPV Sbjct: 292 VARAIDAEMKK-RGL----DYVDLDISDKSPEFLKEHFPTIMARCLEL-GIDMTKQPIPV 345 Query: 354 VPTIHYQMGGIPTNVHGQVVAPKGGSMKEVVQGMYAIGECACVSVHGANRLGTNSLLDLV 413 VP HY GGI T++ G+ P G+YA+GE +HGANRL +NSLL+ + Sbjct: 346 VPAAHYTCGGIITDLSGRTDLP----------GLYAVGEATYTGLHGANRLASNSLLECL 395 Query: 414 VFGRAAGNHIVGTRLQDQSHKPIPAGALDRSLERIAHLESSTGSERVQDVA-----NDIR 468 V GRA +I D+ K + L + + + S ++ ++V +++R Sbjct: 396 VLGRATAKYI------DEQPK--------QKLSTLPNWDESRVTDADEEVIIANNWDELR 441 Query: 469 ATMQKYCGVFRTDALLQEGYKKIMELDERRKHVSFKDKSKVFNTARV--EALELDNLIET 526 M Y G+ RT L+ +I L E + + + R+ + LEL NL+E Sbjct: 442 RFMWNYVGIVRTTKRLERAQHRIRLLKE--------EIDEYYANFRITPDLLELRNLVEV 493 Query: 527 AKATITSAAARKESRGAHAHSDY 549 A + SA +R+ESRG H DY Sbjct: 494 ASLIVNSALSRRESRGLHYSRDY 516 Database: BlastDatabases/707/707 Posted date: Apr 13, 2011 12:58 PM Number of letters in database: 1,221,021 Number of sequences in database: 3697 Lambda K H 0.319 0.135 0.400 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3697 Number of Hits to DB: 1,465,026 Number of extensions: 65861 Number of successful extensions: 225 Number of sequences better than 1.0e-08: 2 Number of HSP's gapped: 217 Number of HSP's successfully gapped: 2 Length of query: 592 Length of database: 1,221,021 Length adjustment: 89 Effective length of query: 503 Effective length of database: 891,988 Effective search space: 448669964 Effective search space used: 448669964 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 132 (55.5 bits)