BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.2943.p
         (954 letters)

Database: BlastDatabases/707/707 
           3697 sequences; 1,221,021 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|152980216|ref|YP_001353202.1| 2-oxoglutarate dehydrogenase E1...  1716   0.0  

>gi|152980216|ref|YP_001353202.1| 2-oxoglutarate dehydrogenase E1
           component [Janthinobacterium sp. Marseille]
          Length = 952

 Score = 1716 bits (4445), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 805/952 (84%), Positives = 881/952 (92%), Gaps = 1/952 (0%)

Query: 4   LYEQYNINSYLFGGNAPYIEELYEAYLNNPGSVPDNWRAYFDAVQHVPATDGSTRPDVAH 63
           + +Q   NSYLFGGNAPY+EELYEAYL+NPGSVPDNWRAYFDA+QHVPA DGS +PDVAH
Sbjct: 1   MMQQSQSNSYLFGGNAPYVEELYEAYLDNPGSVPDNWRAYFDAMQHVPAVDGSAKPDVAH 60

Query: 64  APVIASFAERAKQGPIRTVIASADSDMGRKRVAVTQLIAGYRDLGSRFANLDPLQRQERP 123
           A VIASFAERAK GPIRTV AS D +MGRKRVAVTQLIA YR LG+ +ANLDPLQRQERP
Sbjct: 61  ASVIASFAERAKHGPIRTVTASEDVEMGRKRVAVTQLIAAYRVLGNNWANLDPLQRQERP 120

Query: 124 NIPELDPSFYGFTDADMDIVFNINNTYFGPETASLRDLLQMLRDTYTRSIGAEFTYISDM 183
            IP+L+PSFYGFTDADMDIVFNI+NT+FG ET+SLRDLL  LRDTY RSIG EF YISD 
Sbjct: 121 PIPQLEPSFYGFTDADMDIVFNISNTHFGSETSSLRDLLNALRDTYCRSIGPEFMYISDP 180

Query: 184 SEVRWLEERLEPTRAVPSFSSEKKKHILERLTAAEGLERYLHTKYVGQKRFSLEGGESFI 243
           ++  WL+ER E  R+ P+FSSEKKKHILERLTAAEGLERYLHTKYVGQKRFSLEG ESFI
Sbjct: 181 AQKLWLQERFESVRSTPTFSSEKKKHILERLTAAEGLERYLHTKYVGQKRFSLEGSESFI 240

Query: 244 ASLDETIQRAGEKGVQEIVIGMAHRGRLNVLVNILGKTPQELFSEFEGRHADDLPAGDVK 303
           A+LDE IQR GEKGVQEIVIGMAHRGRLNVLVN LGK PQELF+EFEGRH DDLP+GDVK
Sbjct: 241 AALDEVIQRGGEKGVQEIVIGMAHRGRLNVLVNTLGKMPQELFAEFEGRHGDDLPSGDVK 300

Query: 304 YHQGFSSDVSTPGGPVHLSLAFNPSHLEIVNPVVEGSVKARMDRRGDKDGSQ-VLPILVH 362
           YHQGFSSD+STPGGP+HLSLAFNPSHLEIVNPVVEGSV+AR++RRG  D SQ VLPIL+H
Sbjct: 301 YHQGFSSDISTPGGPIHLSLAFNPSHLEIVNPVVEGSVRARIERRGQNDPSQQVLPILIH 360

Query: 363 GDAAFAGQGVVMETLNLAQTRGYGTGGTVHIVINNQIGFTTSDPRDSRSTLYCSDVVKMI 422
           GDAAFAGQGV+METLNLAQTRGYGTGGTVHI+INNQIGFTTSDPRDSRSTLYC+DV KMI
Sbjct: 361 GDAAFAGQGVIMETLNLAQTRGYGTGGTVHIIINNQIGFTTSDPRDSRSTLYCTDVSKMI 420

Query: 423 EAPVLHVNGDDPEAVVFATQIAVDYRMKFKKDIVVDIICFRKLGHNEQDTPALTQPLMYK 482
           EAPV+HVNGDDPEAVVFA Q+A+DYR++F+KDIVVDI+C+RKLGHNEQDTPALTQPLMYK
Sbjct: 421 EAPVIHVNGDDPEAVVFAAQLALDYRLEFRKDIVVDIVCYRKLGHNEQDTPALTQPLMYK 480

Query: 483 KIAQHPGTRKLYADKLVTQQTIPADGGEELVKAYRAAMDAGKHAIDPVLTNFKSKYAVDW 542
           KIA HPGTRKLYADKL+TQ TI A+ G+ +V+ YR AMDAGKH IDPV++NFKSKYAVDW
Sbjct: 481 KIAAHPGTRKLYADKLLTQGTIGAEEGDAMVREYRDAMDAGKHTIDPVISNFKSKYAVDW 540

Query: 543 LPFLNRKWTDAAETAVPLAELKRLATKITSVPEGFKVHSLVEKVLNDRAAMGRGEMNLDW 602
           +PFLNRKWTDAA+TAVPLAELKRLA +IT++PE FKVH LVEKVLNDRAAMGRGEMNLDW
Sbjct: 541 MPFLNRKWTDAADTAVPLAELKRLAERITTLPENFKVHPLVEKVLNDRAAMGRGEMNLDW 600

Query: 603 GMGEHLAYASLVSSGYAVRLTGQDAGRGTFTHRHAVLHDQNRERWDAGTFIPLQNVAENQ 662
           GMGEHLAYASLVSSGYAVRLTGQD+GRGTF HRHAVLHDQNRERWDAGT++PLQN+++ Q
Sbjct: 601 GMGEHLAYASLVSSGYAVRLTGQDSGRGTFVHRHAVLHDQNRERWDAGTYVPLQNISDQQ 660

Query: 663 STFTVIDSVLSEEAVLAFEYGYSTAEPNTLTIWEAQFGDFANGAQVVMDQFISSGEVKWG 722
           + F VIDSVLSEEAVLA+EYGYSTAEPNTL IWEAQFGDF NGAQVV+DQFISSGEVKWG
Sbjct: 661 AWFRVIDSVLSEEAVLAYEYGYSTAEPNTLVIWEAQFGDFVNGAQVVIDQFISSGEVKWG 720

Query: 723 RASGLVQMLPHGYEGQGPEHSSARIERYLQLCADNNMQVVQPTTAAQIFHLLRRQMIRLF 782
           RASGLV MLPHGYEGQGPEHSSAR ER+LQLCADNNMQVVQPTT+AQIFHLLRRQMIRLF
Sbjct: 721 RASGLVMMLPHGYEGQGPEHSSARPERFLQLCADNNMQVVQPTTSAQIFHLLRRQMIRLF 780

Query: 783 RKPLIIMTPKSLLRNKDAGSPLSDLAKGSFQTVIPEVDETIDAKKVKRIVACSGKVYYDL 842
           RKPL+I+TPKSLLRNKDAGSPL+DL KGSFQTVI EVD+ IDAKKVKR++ACSG+VYYDL
Sbjct: 781 RKPLVILTPKSLLRNKDAGSPLTDLVKGSFQTVIGEVDDKIDAKKVKRVIACSGRVYYDL 840

Query: 843 VNARKERGQTDTAIIRVEQLYPFPHKAFAAALKQFPNFNELVWAQDEPQNQGAWLQIQHN 902
           V ARKERGQ+D AIIR+EQLYPFPHKAFAA LK+FPNF ELVW QDEPQNQGAW QIQHN
Sbjct: 841 VAARKERGQSDVAIIRIEQLYPFPHKAFAAELKKFPNFTELVWTQDEPQNQGAWFQIQHN 900

Query: 903 IFENLSEGQKLAYAGRPASASPAVGYYDKHYAQQKALIETAFAKLKGFVLTK 954
           I EN+++GQKLAYAGRPASASPAVGYYDKHYAQQKALI+ AFAKLKGFV TK
Sbjct: 901 ILENMADGQKLAYAGRPASASPAVGYYDKHYAQQKALIDAAFAKLKGFVQTK 952


  Database: BlastDatabases/707/707
    Posted date:  Apr 13, 2011 12:58 PM
  Number of letters in database: 1,221,021
  Number of sequences in database:  3697
  
Lambda     K      H
   0.318    0.134    0.394 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3697
Number of Hits to DB: 2,356,304
Number of extensions: 104504
Number of successful extensions: 251
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 250
Number of HSP's successfully gapped: 1
Length of query: 954
Length of database: 1,221,021
Length adjustment: 92
Effective length of query: 862
Effective length of database: 880,897
Effective search space: 759333214
Effective search space used: 759333214
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 134 (56.2 bits)