BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.2942.p
         (413 letters)

Database: BlastDatabases/707/707 
           3697 sequences; 1,221,021 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|152980205|ref|YP_001353203.1| 2-oxoglutarate dehydrogenase E2...   615   e-177
gi|152980112|ref|YP_001352364.1| pyruvate dehydrogenase E2 compo...   151   5e-38

>gi|152980205|ref|YP_001353203.1| 2-oxoglutarate dehydrogenase E2
           component (dihydrolipoamide succinyltransferase)
           [Janthinobacterium sp. Marseille]
          Length = 423

 Score =  615 bits (1587), Expect = e-177,   Method: Compositional matrix adjust.
 Identities = 328/423 (77%), Positives = 362/423 (85%), Gaps = 10/423 (2%)

Query: 1   MAQIEVKVPQLSESVAEATLLQWHKKVGEPVARDENLIDIETDKVVLELPSPDAGVITQI 60
           MA +EVKVPQLSESVAEATLLQWHKKVGE VARDENLIDIETDKVVLELP+PDAGVITQI
Sbjct: 1   MAILEVKVPQLSESVAEATLLQWHKKVGETVARDENLIDIETDKVVLELPAPDAGVITQI 60

Query: 61  IKADGTTVVAGEVIAILDTDASAQVAPTE---VKAAPAPQATNEPTPVAAPELASKGDVA 117
           ++AD +TVVAGEVIA++DTD SA   P     + A     A        A    S   +A
Sbjct: 61  VRADNSTVVAGEVIALIDTDLSAVAIPAAVAPLAATTPASAPAPAASAPAAASNSASGIA 120

Query: 118 MPAAAKLLADNNLSTSQVTGTGKDGRVTKGDVLGALSAPAAAPAAAAKPA-----LAQVA 172
           MPAAAK+LA+NNLSTS V G+GKDGRVTKGDV+  L+ PAAAPAAAA  A     L QVA
Sbjct: 121 MPAAAKMLAENNLSTSDVAGSGKDGRVTKGDVINQLAKPAAAPAAAAPAAAAKPALQQVA 180

Query: 173 APVKAGLE--SRPEQRVPMSRLRARVAERLVQSQSTNAILTTFNEVNMQPVIDLRNKYKD 230
           AP        +RPE+RVPMSRLRAR+AERL+QSQS+NAILTTFNEVNMQPVIDLR KYKD
Sbjct: 181 APAAPSAALANRPEERVPMSRLRARIAERLLQSQSSNAILTTFNEVNMQPVIDLRTKYKD 240

Query: 231 KFEKEHGVKLGFMSFFVKAVVHALKKYPIVNASVDGNDIVYHGYFDIGVAVGSPRGLVVP 290
           KFEKEHGVKLGFMSFFVKA V ALKKYPI+NASVDGNDIVYHGYFDIG+AVGSPRGLVVP
Sbjct: 241 KFEKEHGVKLGFMSFFVKAAVAALKKYPIINASVDGNDIVYHGYFDIGIAVGSPRGLVVP 300

Query: 291 ILRDADQMSIADIEKKIGEFGQKAKDGKLSIEELSGGTFTVSNGGTFGSMLSTPIINPPQ 350
           ILRDADQMSIA+IEKKIGEFG KAKDGKL++++L+GGTF++SNGG FGSMLSTPIINPPQ
Sbjct: 301 ILRDADQMSIAEIEKKIGEFGNKAKDGKLTLDDLTGGTFSISNGGIFGSMLSTPIINPPQ 360

Query: 351 SAILGIHATKERAVVENGQVVVRPINYFALSYDHRIIDGREAVLSLVAIKEALEDPARLL 410
           SAILGIHATKERAVVENGQ+V+RP+NY A+SYDHRIIDGREAVL LVA+KEALEDPARLL
Sbjct: 361 SAILGIHATKERAVVENGQIVIRPMNYLAMSYDHRIIDGREAVLGLVAMKEALEDPARLL 420

Query: 411 LDL 413
           LDL
Sbjct: 421 LDL 423


>gi|152980112|ref|YP_001352364.1| pyruvate dehydrogenase E2
           component (dihydrolipoamide acetyltransferase)
           [Janthinobacterium sp. Marseille]
          Length = 458

 Score =  151 bits (382), Expect = 5e-38,   Method: Compositional matrix adjust.
 Identities = 100/308 (32%), Positives = 163/308 (52%), Gaps = 15/308 (4%)

Query: 117 AMPAAAKLLADNNLSTSQVTGTGKDGRVTKGDVLGALSAPAAAPAAAAKPALAQVAAPVK 176
           A P+  K   +  +   +V G+G  GR+T+ DV   +    AA   AA  A    +    
Sbjct: 153 ASPSIRKFARELGVDLGKVAGSGPKGRITQEDVQNYVKGIIAAGPVAATAAAPVKSGG-G 211

Query: 177 AGLESRPEQRV-----------PMSRLRARVAERLVQSQSTNAILTTFNEVNMQPVIDLR 225
           AGL+  P   +           P+SR++      L ++      +T ++E ++  + +LR
Sbjct: 212 AGLDLLPWPSLDFSKFGTTTLQPLSRIKKISGPNLHRNWVMIPHVTQYDEADVTELEELR 271

Query: 226 NKYKDKFEKEHGVKLGFMSFFVKAVVHALKKYPIVNASVDGN--DIVYHGYFDIGVAVGS 283
                   K  GVKL  ++F +KA V ALKKYP  N+S+D N  +++   Y++IG A  +
Sbjct: 272 KSTNTALAKS-GVKLTMLAFVIKACVAALKKYPEFNSSLDANGENLILKQYYNIGFAADT 330

Query: 284 PRGLVVPILRDADQMSIADIEKKIGEFGQKAKDGKLSIEELSGGTFTVSNGGTFGSMLST 343
           P+GLVVP+++  DQ ++  I +++G+   +A++GKL   ++ G TFT+S+ G  G    T
Sbjct: 331 PQGLVVPVVKGVDQKTVTQIAQEMGDLSAQAREGKLKPADMQGATFTISSLGGIGGTYFT 390

Query: 344 PIINPPQSAILGIHATKERAVVENGQVVVRPINYFALSYDHRIIDGREAVLSLVAIKEAL 403
           P+IN P+ AI+G+  T  + V +  Q V R I   +LSYDHR+IDG +    +  + E L
Sbjct: 391 PLINAPEVAIIGLSKTSMKPVWDGKQFVPRLIMPLSLSYDHRVIDGAQGARFVTYLSEVL 450

Query: 404 EDPARLLL 411
            D  + LL
Sbjct: 451 SDLRKSLL 458


  Database: BlastDatabases/707/707
    Posted date:  Apr 13, 2011 12:58 PM
  Number of letters in database: 1,221,021
  Number of sequences in database:  3697
  
Lambda     K      H
   0.314    0.131    0.360 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3697
Number of Hits to DB: 919,999
Number of extensions: 38754
Number of successful extensions: 168
Number of sequences better than 1.0e-08: 3
Number of HSP's gapped: 160
Number of HSP's successfully gapped: 3
Length of query: 413
Length of database: 1,221,021
Length adjustment: 86
Effective length of query: 327
Effective length of database: 903,079
Effective search space: 295306833
Effective search space used: 295306833
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 131 (55.1 bits)