BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.2941.p (475 letters) Database: BlastDatabases/707/707 3697 sequences; 1,221,021 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|152980382|ref|YP_001353204.1| dihydrolipoamide dehydrogenase ... 838 0.0 gi|152979891|ref|YP_001352366.1| dihydrolipoamide dehydrogenase ... 295 3e-81 gi|152980459|ref|YP_001352656.1| glutathione reductase [Janthino... 173 2e-44 gi|152981182|ref|YP_001353439.1| putative mercuric reductase [Ja... 168 7e-43 gi|152983056|ref|YP_001352644.1| mercuric reductase [Janthinobac... 158 7e-40 >gi|152980382|ref|YP_001353204.1| dihydrolipoamide dehydrogenase [Janthinobacterium sp. Marseille] Length = 475 Score = 838 bits (2164), Expect = 0.0, Method: Compositional matrix adjust. Identities = 406/475 (85%), Positives = 432/475 (90%) Query: 1 MSKNFDVVVIGGGPGGYIAAIRAAQLGFNTACIDEWKNEKGGPAPGGTCTNVGCIPSKAL 60 MSKNFDVVVIG GPGGY+AAIRAAQLGF ACIDEWKNEKGGPAPGGTCTNVGCIPSKA+ Sbjct: 1 MSKNFDVVVIGAGPGGYVAAIRAAQLGFTVACIDEWKNEKGGPAPGGTCTNVGCIPSKAM 60 Query: 61 LQSSEHYEHASHGFAEHGIEVKGLGLNLEKMLGRKNTVVKQNNDGILYLFKKNKVAFFHG 120 LQSSE+Y HA H FAEHGIEVKGL LN++KM+ RK+TVVKQNNDGILYLFKKNKV FFHG Sbjct: 61 LQSSENYHHAGHAFAEHGIEVKGLSLNVKKMVARKDTVVKQNNDGILYLFKKNKVTFFHG 120 Query: 121 RGSFVKGDANGYEIKVAGAAEETITAKHVIVATGSNARALPGAEFDEKLILSNTGALSIS 180 RGSFVK G+EIK+AGA EE I AKHV+VATGSN RALPGA FDEKLILSNTGAL I+ Sbjct: 121 RGSFVKAADGGHEIKIAGATEENIFAKHVVVATGSNPRALPGAAFDEKLILSNTGALEIT 180 Query: 181 EVPKKLGVIGAGVIGLEMGSVWRRLGAEVTVLEALPTFLGAVDEQIAKEAHKLLTKQGLA 240 EVPK+LGVIGAGVIGLEMGSVWRRLG+EVTVLEALP FLGAVD+ +AKEA K TKQGLA Sbjct: 181 EVPKRLGVIGAGVIGLEMGSVWRRLGSEVTVLEALPAFLGAVDDAVAKEAFKQFTKQGLA 240 Query: 241 VNLGVKIGAIKTGKNSVSVEYTDAKGEAHTGEFDKLIISIGRTPNTIGLNAEGVGLKLDE 300 ++LGV+IGAI GKN V+V Y D KG A FDKLI+SIGR PNTIGLNAE VGLKLDE Sbjct: 241 ISLGVQIGAITAGKNDVTVNYVDDKGAAQKAVFDKLIVSIGRVPNTIGLNAEAVGLKLDE 300 Query: 301 RGFIAVDGDCKTNLPNVWAVGDVVRGPMLAHKAEEEGVAVAERIAGQHGHVNFNTIPWVI 360 RGFIAVD DCKT+LPNVWAVGDVVRGPMLAHK+EEEGVAVAERIAGQHGHVNFNTIPWVI Sbjct: 301 RGFIAVDADCKTSLPNVWAVGDVVRGPMLAHKSEEEGVAVAERIAGQHGHVNFNTIPWVI 360 Query: 361 YTSPEIAWVGKTEQQLKAEGVQYKAGTFPFLANGRARALGDTSGMVKFLADAKTDEILGV 420 YTSPEIAWVGKTEQQLKAE + YKAG+FPFLANGRARALGDT+G VKFLADAKTDEILGV Sbjct: 361 YTSPEIAWVGKTEQQLKAEKIAYKAGSFPFLANGRARALGDTTGFVKFLADAKTDEILGV 420 Query: 421 HIVGPMASELISEAVVAMEFRASSEDIARICHAHPSLSEATKEAALAVDKRALNF 475 HI+GPMASELISEAVVAMEFRASSEDIARICHAHPSLSEA KEAALAVD RALNF Sbjct: 421 HIIGPMASELISEAVVAMEFRASSEDIARICHAHPSLSEAVKEAALAVDGRALNF 475 >gi|152979891|ref|YP_001352366.1| dihydrolipoamide dehydrogenase [Janthinobacterium sp. Marseille] Length = 603 Score = 295 bits (756), Expect = 3e-81, Method: Compositional matrix adjust. Identities = 177/463 (38%), Positives = 263/463 (56%), Gaps = 13/463 (2%) Query: 6 DVVVIGGGPGGYIAAIRAAQLGFNTACIDEWKNEKGGPAPGGTCTNVGCIPSKALLQSSE 65 D++V+G GPGGY AA RAA LG +T I+ + GG C NVGCIPSKALL + Sbjct: 135 DMMVLGAGPGGYSAAFRAADLGMSTVLIERYSTL------GGVCLNVGCIPSKALLHVAA 188 Query: 66 HYEHASHGFAEHGIEVKGLGLNLEKMLGRKNTVVKQNNDGILYLFKKNKVAFFHGRGSFV 125 + + A HG+ ++++K+ G K V+ + G+ + K KV G G FV Sbjct: 189 VIDETAS-MAAHGVTFGKPQIDIDKLRGYKEQVIGKMTTGLAGMAKARKVNVVQGVGQFV 247 Query: 126 KGDANGYEIKVAGAAEETITAKHVIVATGSNARALPGAEFDEKLILSNTGALSISEVPKK 185 N E+ A +++TI K I+A GS+ LP D + I+ +TGAL + VPK+ Sbjct: 248 --GPNHIEVTAADGSKKTIQFKQAIIAAGSSVVNLPFVPQDPR-IVDSTGALELRSVPKR 304 Query: 186 LGVIGAGVIGLEMGSVWRRLGAEVTVLEALPTFLGAVDEQIAKEAHKLLTKQGLAVNLGV 245 + VIG G+IGLEM +V+ LGA + V+E + + D + K K K+ + L Sbjct: 305 MLVIGGGIIGLEMATVYSTLGARIDVVEMMDGLMQGADRDMVKVWQKFNEKRFDKIMLKT 364 Query: 246 KIGAIKTGKNSVSVEYTDAKGEAHTGE---FDKLIISIGRTPNTIGLNAEGVGLKLDERG 302 K A++ K + V + A+ A E +D +++++GR+PN + A+ G+ + +RG Sbjct: 365 KTVAVEALKEGIKVSFEAAEAGATAPEPQVYDMVLVAVGRSPNGKKIAADKAGVAVTDRG 424 Query: 303 FIAVDGDCKTNLPNVWAVGDVVRGPMLAHKAEEEGVAVAERIAGQHGHVNFNTIPWVIYT 362 FI VD +TN+P+++A+GD+V PMLAHKA E AE AG+ + + IP V YT Sbjct: 425 FIEVDAQMRTNVPHIFAIGDLVGQPMLAHKAVHEAHVAAEAAAGEKAYFDARVIPSVAYT 484 Query: 363 SPEIAWVGKTEQQLKAEGVQYKAGTFPFLANGRARALGDTSGMVKFLADAKTDEILGVHI 422 PE+AWVG TE + KA+G++ + G FP+ A+GRA A G G K L DA+T I+G I Sbjct: 485 DPEVAWVGITEDEAKAKGIKLEKGHFPWAASGRAVANGRDEGFTKLLFDAETHRIVGGGI 544 Query: 423 VGPMASELISEAVVAMEFRASSEDIARICHAHPSLSEATKEAA 465 VG A ++I E +A+E A + DI + H HP+L E+ AA Sbjct: 545 VGTHAGDMIGEIALAIEMGADAVDIGKTIHPHPTLGESIGMAA 587 >gi|152980459|ref|YP_001352656.1| glutathione reductase [Janthinobacterium sp. Marseille] Length = 462 Score = 173 bits (438), Expect = 2e-44, Method: Compositional matrix adjust. Identities = 134/467 (28%), Positives = 227/467 (48%), Gaps = 32/467 (6%) Query: 1 MSKNFDVVVIGGGPGGYIAAIRAAQLGFNTACIDEWKNEKGGPAPGGTCTNVGCIPSKAL 60 ++ ++D+ VIGGG GG A+ AA LG A +E++ GGTC GC+P K Sbjct: 2 ITYDYDLFVIGGGSGGVRASRLAASLGKRVAIAEEYRF-------GGTCVIRGCVPKKLF 54 Query: 61 LQSSEHYEHASHGFAEHGIEVKGLGLNLEKMLGRKNTVVKQNNDGILYLFKKNKVAFFHG 120 + +S+ +EH +G EV N +K+ K+ + + + N V Sbjct: 55 VYASQFHEHFEDAVG-YGWEVGKNTFNWKKLTAAKDKEIARLEGLYRQGLENNGVEIVES 113 Query: 121 RGSFVKGDANGYEIKVAGAAEETITAKHVIVATGSNAR---ALPGAEFDEKLILSNTGAL 177 R + DA+ + G T+TA+ +++ATG ALPG E L +S+ A Sbjct: 114 RAELI--DAHTIRLTKTG---RTVTAEKIVIATGGTPNPHAALPGHE----LCISSNEAF 164 Query: 178 SISEVPKKLGVIGAGVIGLEMGSVWRRLGAEVTVLEALPTFLGAVDEQIAKEAHKLLTKQ 237 + E+P+ + + G G I +E +++ LGA VT++ L D+ + HK +T++ Sbjct: 165 DLPELPRSILIAGGGYIAVEFANIFHGLGAHVTLIYRGKEILSRFDQDMRHGLHKAMTEK 224 Query: 238 GLAVNLGVKIGAI-KTGKNSVSVEYTDAKGEAHTGEFDKLIISIGRTPNTIGLNAEGVGL 296 G+ + L I I KT + + + + GE+ D +++++GR PNT GL E G+ Sbjct: 225 GIRIMLTDVIENISKTAEGGLMAKTKN--GESMV--VDSVMLALGRDPNTQGLGLEAAGV 280 Query: 297 KLDERGFIAVDGDCKTNLPNVWAVGDVVRGPMLAHKAEEEGVAVAE-RIAGQHGHVNFNT 355 +++ERG I VD +TN+PN++A+GDV L A E + E + + Sbjct: 281 EINERGAIIVDKYSRTNVPNIYALGDVTDRVQLTPVAIHEAMCFIETEYKNNPTAPDHDV 340 Query: 356 IPWVIYTSPEIAWVGKTEQ---QLKAEGVQYKAGTFPFLANGRARALGDTSGMVKFLADA 412 I +++ PEI VG +E+ + +E Y+A P R ++K + DA Sbjct: 341 IATAVFSQPEIGTVGLSEEDAVKRHSELDIYRAEFRPMKTTISGRV---EKTIMKLIVDA 397 Query: 413 KTDEILGVHIVGPMASELISEAVVAMEFRASSEDIARICHAHPSLSE 459 + ++LG HI+G A E++ VA++ + ED R HP+ +E Sbjct: 398 VSRKVLGAHILGHDAGEMVQLLGVALKAGVTKEDFDRTMAVHPTAAE 444 >gi|152981182|ref|YP_001353439.1| putative mercuric reductase [Janthinobacterium sp. Marseille] Length = 561 Score = 168 bits (425), Expect = 7e-43, Method: Compositional matrix adjust. Identities = 134/484 (27%), Positives = 224/484 (46%), Gaps = 45/484 (9%) Query: 3 KNFDVVVIGGGPGGYIAAIRAAQLGFNTACIDEWKNEKGGPAPGGTCTNVGCIPSKALLQ 62 + VVVIG G AA++A + G + + I E+G GGTC NVGC+PSK +++ Sbjct: 97 RPLQVVVIGSGGAAMAAALKAVEQGAHVSLI-----ERG--TIGGTCVNVGCVPSKIMIR 149 Query: 63 SSEHYEHASHGFAEHGIEVKGLGLNLEKMLGRKNTVVKQ----NNDGILYLFKKNKVAFF 118 ++ + GI ++ K+L ++ V + +GIL + Sbjct: 150 AAHIAHLRRESPFDGGIAATVPAIDRSKLLAQQQARVDELRHAKYEGILD--GNPAITVV 207 Query: 119 HGRGSFVKGDANGYEIKVAGAAEETITAKHVIVATGSNARALPGAEFDEKLILSNTGALS 178 HG F D +++ E + +VATG++ P E ++T AL Sbjct: 208 HGEARF--KDEQSLVVRLNDGGERVVAFDRCLVATGASPAVPPIPGLKESPYWTSTEALV 265 Query: 179 ISEVPKKLGVIGAGVIGLEMGSVWRRLGAEVTVLEALPTFLGAVDEQIAKEAHKLLTKQG 238 +P++L VIG+ V+ LE+ + RLG++VT+L A T D I + +G Sbjct: 266 SDTLPERLAVIGSSVVALELAQAFARLGSQVTIL-ARNTLFFRDDPSIGEAVTAAFRAEG 324 Query: 239 LAVNLGVKIGAIKTGKNSVSVEYTDAKGEAHT-GEF-----------DKLIISIGRTPNT 286 + V +E+T A AH GEF DKL+++ GRTPNT Sbjct: 325 IKV-----------------LEHTQASQVAHVNGEFVLTTGHGEVRADKLLVATGRTPNT 367 Query: 287 IGLNAEGVGLKLDERGFIAVDGDCKTNLPNVWAVGDVVRGPMLAHKAEEEGVAVAERIAG 346 L + G+ ++ +G I +D +T+ P+++A GD P + A G A + G Sbjct: 368 RSLALDAAGVTVNAQGAIVIDKGMRTSTPHIYAAGDCTDQPQFVYVAAAAGTRAAINMTG 427 Query: 347 QHGHVNFNTIPWVIYTSPEIAWVGKTEQQLKAEGVQYKAGTFPFLANGRARALGDTSGMV 406 +N +P V++T P++A VG +E + +G++ + T RA A DT G + Sbjct: 428 GDAAINLTAMPAVVFTDPQVATVGYSEAEAHHDGIETDSRTLTLDNVPRALANFDTRGFI 487 Query: 407 KFLADAKTDEILGVHIVGPMASELISEAVVAMEFRASSEDIARICHAHPSLSEATKEAAL 466 K + + + ++GV +V P A ELI AV+A+ R + +++A + ++ E K AA Sbjct: 488 KLVIEEGSGRLIGVQVVAPEAGELIQTAVLAIRNRMTVQELADQLFPYLTMVEGLKLAAQ 547 Query: 467 AVDK 470 K Sbjct: 548 TFSK 551 >gi|152983056|ref|YP_001352644.1| mercuric reductase [Janthinobacterium sp. Marseille] Length = 474 Score = 158 bits (400), Expect = 7e-40, Method: Compositional matrix adjust. Identities = 121/458 (26%), Positives = 204/458 (44%), Gaps = 19/458 (4%) Query: 5 FDVVVIGGGPGGYIAAIRAAQLGFNTACIDEWKNEKGGPAPGGTCTNVGCIPSKALLQSS 64 FD ++IG G A R G A I+ + GGTC N GC P+K ++ S+ Sbjct: 20 FDAIIIGTGQAAPALANRLTASGMRIAVIER-------SSVGGTCVNTGCTPTKTMVASA 72 Query: 65 EHYEHASHGFAEHGIEVK-GLGLNLEKMLGRKNTVVKQNNDGIL-YLFKKNKVAFFHGRG 122 A+ AE+G+ + ++++ + R + +V+ + G+ ++ G Sbjct: 73 YVARMAARA-AEYGVVLHHPPAIDMKAIKARVDKIVQTDRVGLENWMTGMPGCTLIRGHA 131 Query: 123 SFVKGDANGYEIKVAGAAEETITAKHVIVATGSNARALPGAEFDEKLILSNTGALSISEV 182 F G+ E+ V + I A + + G A + L+NT +++ V Sbjct: 132 RFESGN----EVCVD---DRRIKANKIFINVGGRAFIPDAVGLENISYLTNTDMVALDIV 184 Query: 183 PKKLGVIGAGVIGLEMGSVWRRLGAEVTVLEALPTFLGAVDEQIAKEAHKLLTKQGLAVN 242 P L ++G IGLE ++RR G+ VTV+E + DE+++ + +L+ + +++ Sbjct: 185 PSHLIIVGGSYIGLEFAQMFRRFGSSVTVIERGSRLIAREDEEVSAQIKDILSNEDISIM 244 Query: 243 LGVKIGAIKTGKNSVSVEYTDAKGEAHTGEFDKLIISIGRTPNTIGLNAEGVGLKLDERG 302 L + + V+V K + L+I++GR PNT L + G++ D G Sbjct: 245 LDAEELQFQKHAAGVAVN-VKCKNDWKKISGSHLLIAVGRRPNTDDLGLDKAGIETDTMG 303 Query: 303 FIAVDGDCKTNLPNVWAVGDVVRGPMLAHKAEEEGVAVAERIAGQHGHVNFNTIP-WVIY 361 +I VD +T VWA+GD H A + VA + + IP + +Y Sbjct: 304 YITVDEQLRTTANGVWALGDCNGRGAFTHTAYNDFEIVAANLLDGETRCVSDRIPAYALY 363 Query: 362 TSPEIAWVGKTEQQLKAEGVQYKAGTFPFLANGRARALGDTSGMVKFLADAKTDEILGVH 421 P + VG T Q K G + + GT RA G+T G ++ + DA+T+EILG Sbjct: 364 IDPPLGRVGMTATQAKKAGRKIRVGTRQMTRVARAIEKGETQGSMRVVVDAETNEILGAA 423 Query: 422 IVGPMASELISEAVVAMEFRASSEDIARICHAHPSLSE 459 I+GP E I + M +A + HP+LSE Sbjct: 424 ILGPGGDEAIHAILATMAAKAPYTQLTHTMAIHPTLSE 461 Database: BlastDatabases/707/707 Posted date: Apr 13, 2011 12:58 PM Number of letters in database: 1,221,021 Number of sequences in database: 3697 Lambda K H 0.316 0.134 0.390 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3697 Number of Hits to DB: 1,113,875 Number of extensions: 48972 Number of successful extensions: 186 Number of sequences better than 1.0e-08: 6 Number of HSP's gapped: 171 Number of HSP's successfully gapped: 6 Length of query: 475 Length of database: 1,221,021 Length adjustment: 87 Effective length of query: 388 Effective length of database: 899,382 Effective search space: 348960216 Effective search space used: 348960216 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 131 (55.1 bits)