BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.2940.p
         (365 letters)

Database: BlastDatabases/707/707 
           3697 sequences; 1,221,021 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|152980706|ref|YP_001353206.1| ATPase [Janthinobacterium sp. M...   559   e-161

>gi|152980706|ref|YP_001353206.1| ATPase [Janthinobacterium sp.
           Marseille]
          Length = 365

 Score =  559 bits (1441), Expect = e-161,   Method: Compositional matrix adjust.
 Identities = 258/358 (72%), Positives = 301/358 (84%)

Query: 1   MDVRQFYEQSLSQRGYQPDEAQLRAIERLQRAYEEWVAYKAQRASTFKRLISRPAVPRGV 60
           M+VR+FYEQ+LSQRG+  DE+QL A+ RLQ+AY+EWV YKAQRA+ F R +  P +PRG+
Sbjct: 1   MNVREFYEQALSQRGFVADESQLNAVNRLQQAYDEWVEYKAQRANAFLRFLRPPEIPRGI 60

Query: 61  YMWGGVGRGKSFLMDSFYSVVPVVRKTRLHFHEFMRDVHRQLDELKGIADPLDEVAKRIA 120
           YMWGGVGRGKSFLMDSFYSVVP+VRKTR+HFHEFMR VHR LDELK + +PLDEVAKRIA
Sbjct: 61  YMWGGVGRGKSFLMDSFYSVVPLVRKTRVHFHEFMRSVHRDLDELKMVVNPLDEVAKRIA 120

Query: 121 KKYRLICFDEFHVSDIADAMILYNLLKGLFDHGVSFVMTSNYEPSTLYPDGLHRDRMLPT 180
           KKYRLICFDEFHV DIADAMILYNL K LF++GVSF++TSN+ P TLYPDGLHRDRMLPT
Sbjct: 121 KKYRLICFDEFHVIDIADAMILYNLFKALFENGVSFIITSNFHPDTLYPDGLHRDRMLPT 180

Query: 181 IALLKEKLDVMNIDAGIDYRKRVLEQVKVYHTPLNAKTDEELRAAFAAVAEAADEDPRVH 240
           I LLKEKLD++N+D+G DYRKR LEQV  Y+ PLN K+ E +R AFA +AE  DE+P + 
Sbjct: 181 IELLKEKLDIVNVDSGSDYRKRALEQVDAYYWPLNEKSSEAMRVAFARIAETTDENPHLK 240

Query: 241 IEAREIRALRRAGSAIWFDFATLCGGPRSQNDYLELASRFQTVILSGIPRMSAAMSSEAR 300
           IE R+++ALRRAG  IWFDFATLCGGPRSQNDYLELASRF T+ LS +P MSA M+S  R
Sbjct: 241 IEGRDVQALRRAGGVIWFDFATLCGGPRSQNDYLELASRFHTLFLSDVPVMSAGMASAVR 300

Query: 301 RFTWLIDVFYDHKVKLIMSAAVEPDELYTVGTLSNEFHRTVSRIIEMQSKEYLDADRR 358
           RF WLIDV YDHK+KL+MSA V  DELYT G    EF RTVSR+IEMQS EY++A+RR
Sbjct: 301 RFIWLIDVLYDHKIKLLMSAEVAMDELYTDGAQIAEFQRTVSRLIEMQSSEYMEAERR 358


  Database: BlastDatabases/707/707
    Posted date:  Apr 13, 2011 12:58 PM
  Number of letters in database: 1,221,021
  Number of sequences in database:  3697
  
Lambda     K      H
   0.323    0.136    0.398 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3697
Number of Hits to DB: 731,228
Number of extensions: 26295
Number of successful extensions: 92
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 91
Number of HSP's successfully gapped: 1
Length of query: 365
Length of database: 1,221,021
Length adjustment: 84
Effective length of query: 281
Effective length of database: 910,473
Effective search space: 255842913
Effective search space used: 255842913
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 130 (54.7 bits)