BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.2939.p
         (300 letters)

Database: BlastDatabases/707/707 
           3697 sequences; 1,221,021 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|152982399|ref|YP_001353207.1| hypothetical protein mma_1517 [...    91   6e-20

>gi|152982399|ref|YP_001353207.1| hypothetical protein mma_1517
           [Janthinobacterium sp. Marseille]
          Length = 230

 Score = 91.3 bits (225), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 72/191 (37%), Positives = 105/191 (54%), Gaps = 12/191 (6%)

Query: 79  QRFPAGSIKSGELAQKALDEAAEDRQVAELRYILDQRACYPKFLVSDCLEAARDRKRLTD 138
           QR+PA SIKS E+A++A+ E  + R   E R+  DQRACY KF  + C++  ++++R+  
Sbjct: 41  QRYPADSIKSNEVAERAVAEVTKARADIEERFAADQRACYKKFFTTSCIDKIKEQRRIDL 100

Query: 139 KGIKAVEYEAKVFQRQATVDDRDRSLAEQRAKDEEDAARRLADQKQKQADSARKVEESRA 198
             IK +E EA  + R A VD+RDR LAE+ A++ E AA          A++ + V+E   
Sbjct: 101 ASIKPIEIEANSYIRHAKVDERDRRLAEKNAQNVEKAA----------ANADKAVDERTP 150

Query: 199 KNSEVQQRIDQNKNVPADYRVRQHE-AEVQRQQAE-EAARAPARAANAAERQRRIQQAEE 256
           K         Q K     Y  R  E AE QR   E E A A  RA N    + +++ +EE
Sbjct: 151 KEGPGATEEAQRKARADGYAKRNAEFAEKQRLLKENEEADAQKRAENVKRYEEKVRASEE 210

Query: 257 HRQEVERKKAE 267
            ++E+ RKKAE
Sbjct: 211 KQKEIARKKAE 221


  Database: BlastDatabases/707/707
    Posted date:  Apr 13, 2011 12:58 PM
  Number of letters in database: 1,221,021
  Number of sequences in database:  3697
  
Lambda     K      H
   0.309    0.120    0.314 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3697
Number of Hits to DB: 359,393
Number of extensions: 10620
Number of successful extensions: 68
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 72
Number of HSP's successfully gapped: 2
Length of query: 300
Length of database: 1,221,021
Length adjustment: 83
Effective length of query: 217
Effective length of database: 914,170
Effective search space: 198374890
Effective search space used: 198374890
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 129 (54.3 bits)