BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.2937.p
         (743 letters)

Database: BlastDatabases/707/707 
           3697 sequences; 1,221,021 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|152979824|ref|YP_001353828.1| ATP-dependent DNA helicase [Jan...  1098   0.0  

>gi|152979824|ref|YP_001353828.1| ATP-dependent DNA helicase
           [Janthinobacterium sp. Marseille]
          Length = 669

 Score = 1098 bits (2839), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 540/674 (80%), Positives = 590/674 (87%), Gaps = 24/674 (3%)

Query: 55  HDAEIDRLFGAGGPLGGAVGSYRPRHAQTEMAKAIATAIANQGTLIAEAGTGTGKTFAYL 114
           HDAEID+LFG   PLG AVGS+RPR +QTEMAKAIA AI+NQ TLIAEAGTGTGKTFAYL
Sbjct: 14  HDAEIDQLFGVDSPLGHAVGSFRPRQSQTEMAKAIAHAISNQSTLIAEAGTGTGKTFAYL 73

Query: 115 VPALLWGGKTIVSTGTKTLQDQLYNRDIPTVRNALHAPVSVALLKGRSNYVCHFHLERTL 174
           VPALLWGGK IVSTGTK LQDQL+ RDIP+VR AL+APVSVALLKGR+NYVCHFHLERTL
Sbjct: 74  VPALLWGGKVIVSTGTKNLQDQLFLRDIPSVRKALNAPVSVALLKGRANYVCHFHLERTL 133

Query: 175 QNGRLTAREDVGYLREISRFVKSTSSGDKAELTKVPETASVWNLVTSTRDTCFGSECQYY 234
           QNGRLT+R+DVGYLREISRF+K+T SGDKAEL+KVPETAS+WNLVTSTRDTC G+ECQYY
Sbjct: 134 QNGRLTSRDDVGYLREISRFMKTTGSGDKAELSKVPETASIWNLVTSTRDTCMGAECQYY 193

Query: 235 QDCFVMKARKEAQQADVVVVNHHLFFADVALKDTGIAELLPSANTVIFDEAHQLPDTATL 294
           QDCFVMKARKEAQQADVVVVNHHLFFADVALKDTG+AELLPSANT+IFDEAHQLPDTATL
Sbjct: 194 QDCFVMKARKEAQQADVVVVNHHLFFADVALKDTGVAELLPSANTIIFDEAHQLPDTATL 253

Query: 295 FFGETISTSQILELCRDVLAEGLSHARDGADWARLVAPVERAARDLRLAFPEESIRLALN 354
           FFGETISTSQ+LELCRDVLAEGLSHARDGADWA  V PVERAARDLRL FP++ +RLA+N
Sbjct: 254 FFGETISTSQVLELCRDVLAEGLSHARDGADWAGTVTPVERAARDLRLTFPQDIVRLAVN 313

Query: 355 QIAPSAAFFPALDTLKDSMDDMIAVLEKQAERAETIEQCRDRANELLRQLENWGTPEELA 414
           QIAPS+AFFPAL+TLK+ +D+MIAVL+KQAERAETIEQCR RA EL  +L+ W  P    
Sbjct: 314 QIAPSSAFFPALETLKEQLDNMIAVLQKQAERAETIEQCRVRALELAMRLDAWNKP---- 369

Query: 415 KAQPEAASKPTATVGEPSEGEGDESPQKPFYVPWVEAFQSSLQLHRTPLSIAPIFNKQRE 474
                   K T  +       G ES      V WVEA+ +SLQLH+TPLSIAPIFNKQRE
Sbjct: 370 --------KTTEVI------IGQES------VLWVEAYSTSLQLHQTPLSIAPIFNKQRE 409

Query: 475 GTPRSWIFTSATLAVKKDFNHYAAQMGLWNAPAQSWPSPFNYGEQGILYVPQHLPQPNSF 534
           GTPR+WIFTSATLAVK DFNHY+AQMGLW+ PA+SWPSPF YGEQG+LYVP  LPQPNS 
Sbjct: 410 GTPRTWIFTSATLAVKNDFNHYSAQMGLWDEPAKSWPSPFEYGEQGLLYVPTSLPQPNSP 469

Query: 535 EYTDAVIDAALPTIEAAGGRCFFLCTTLRAVNRAAERLRTEFAARGHDFPLFVQGEAGRT 594
           EYTDAVIDAALP IEAAGG  F LCTT+RAVNRAAERLR EF  R   FPL VQGEAGRT
Sbjct: 470 EYTDAVIDAALPVIEAAGGGAFLLCTTIRAVNRAAERLREEFERRKLPFPLMVQGEAGRT 529

Query: 595 ELLDRFRAAGNGVLIGSQSFWEGVDVRGDALSLVIIDKLPFSPPDDPVLAARISEMEKQG 654
           ELLDRFRAAGN VLIGSQSFWEGVDVRGDALS+VIIDKLPFSPPDDPVLAARI  +E++G
Sbjct: 530 ELLDRFRAAGNAVLIGSQSFWEGVDVRGDALSVVIIDKLPFSPPDDPVLAARIEALERKG 589

Query: 655 LNGFVHHQLPAAIINLKQGAGRLIRDEGDRGVLMICDPRIITKNYGRRIWQSLPPFKRTR 714
           +NGF+HHQLPAAIINLKQGAGRLIRDE D+GVLMICDPR+I+K YG+RIWQSLPPFKRTR
Sbjct: 590 MNGFMHHQLPAAIINLKQGAGRLIRDERDKGVLMICDPRLISKPYGKRIWQSLPPFKRTR 649

Query: 715 ELEVVQAFFREQDA 728
           EL VVQ FF   DA
Sbjct: 650 ELAVVQDFFATIDA 663


  Database: BlastDatabases/707/707
    Posted date:  Apr 13, 2011 12:58 PM
  Number of letters in database: 1,221,021
  Number of sequences in database:  3697
  
Lambda     K      H
   0.319    0.133    0.397 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3697
Number of Hits to DB: 1,652,617
Number of extensions: 68317
Number of successful extensions: 237
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 239
Number of HSP's successfully gapped: 1
Length of query: 743
Length of database: 1,221,021
Length adjustment: 90
Effective length of query: 653
Effective length of database: 888,291
Effective search space: 580054023
Effective search space used: 580054023
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 133 (55.8 bits)