BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.2935.p
         (245 letters)

Database: BlastDatabases/707/707 
           3697 sequences; 1,221,021 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|152979990|ref|YP_001353827.1| stationary phase survival prote...   388   e-109

>gi|152979990|ref|YP_001353827.1| stationary phase survival protein
           SurE [Janthinobacterium sp. Marseille]
          Length = 245

 Score =  388 bits (996), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 195/244 (79%), Positives = 220/244 (90%)

Query: 1   MKILISNDDGYLAPGIIALAEALAPIADITVVAPDSNRSGSSNSLTLDRPLWVEQAANGF 60
           MKILISNDDGYLAPG+IALA+A+A IADI VVAPDSNRSGSSNSLTLDRPL V QAANGF
Sbjct: 1   MKILISNDDGYLAPGLIALADAMAAIADIVVVAPDSNRSGSSNSLTLDRPLSVYQAANGF 60

Query: 61  YYLNGTPSDCVHVALTGLLQERPDLIVSGINQGQNMGDDTLYSGTVAAATEGFLFGIPSI 120
           Y++NGTPSDCVH+ALTG++ E PDLIVSGINQGQNMGDDTLYSGTVAAATEGFLFGIP+I
Sbjct: 61  YFINGTPSDCVHIALTGIMSEPPDLIVSGINQGQNMGDDTLYSGTVAAATEGFLFGIPAI 120

Query: 121 AFSQLHKGWAELKSAARIAREVVERRFDSLPKPYLLNVNIPNLPYEEIKGSLATRLGKRH 180
           AFSQ++KGW ++ +AAR+AR++VERRFD+  KP+LLNVNIPNLPYE++K  +ATRLGKRH
Sbjct: 121 AFSQVNKGWGQIDAAARVARDIVERRFDTYGKPFLLNVNIPNLPYEQMKSPVATRLGKRH 180

Query: 181 MSEPVHKLTDPHGRDLYWIGPAGAAKDGGEGTDFHATANGYVSITPLQIDLTHTAQLDNL 240
            SE V K  DPHGRD+YWIGP G  KD GEGTDFHATA G+VSITPLQIDLTHTAQL+ L
Sbjct: 181 QSEAVIKAQDPHGRDIYWIGPCGGQKDAGEGTDFHATALGHVSITPLQIDLTHTAQLEAL 240

Query: 241 KKAL 244
           KK L
Sbjct: 241 KKVL 244


  Database: BlastDatabases/707/707
    Posted date:  Apr 13, 2011 12:58 PM
  Number of letters in database: 1,221,021
  Number of sequences in database:  3697
  
Lambda     K      H
   0.316    0.135    0.400 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3697
Number of Hits to DB: 566,428
Number of extensions: 23774
Number of successful extensions: 68
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 68
Number of HSP's successfully gapped: 1
Length of query: 245
Length of database: 1,221,021
Length adjustment: 81
Effective length of query: 164
Effective length of database: 921,564
Effective search space: 151136496
Effective search space used: 151136496
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 128 (53.9 bits)