BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.2934.p
         (321 letters)

Database: BlastDatabases/707/707 
           3697 sequences; 1,221,021 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|152980875|ref|YP_001353826.1| protein-L-isoaspartate(D-aspart...   395   e-111
gi|152981335|ref|YP_001354622.1| protein-L-isoaspartate(D-aspart...    86   2e-18

>gi|152980875|ref|YP_001353826.1|
           protein-L-isoaspartate(D-aspartate) O-methyltransferase
           [Janthinobacterium sp. Marseille]
          Length = 292

 Score =  395 bits (1016), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 211/325 (64%), Positives = 240/325 (73%), Gaps = 38/325 (11%)

Query: 1   MSDKPSRFPLSLSSVVDKKKTANA----GRDVPGRPQATTQTAAKNAAQSSQRAALKPVQ 56
           M++K  RFPLSLSS+ +K   + A     R       AT QTA +NA+Q  +R       
Sbjct: 1   MTEK-KRFPLSLSSIAEKAPRSGARTEVNRSSTSGKVATPQTATQNASQHGKRT------ 53

Query: 57  QGLAQALRPPPAPPRAPLAPAQPLLSAAPVPRTAVKNVMTVTQTNASHHASPLASEAVRK 116
                            + PA+P    A VPR A          +++  A+PL SEAVRK
Sbjct: 54  -----------------ITPARP----AEVPRKAA------AAPSSNERATPLVSEAVRK 86

Query: 117 AMVARVAKQGVADAKVLAALEAVPRHMFVEPGLASQAYIDASLPIGHHQTISQPYIVARM 176
           AM ARVAKQGV D+KVLAA++AVPRH+F+EP LASQAYIDASLPIG+HQTISQPYIVARM
Sbjct: 87  AMTARVAKQGVKDSKVLAAMDAVPRHLFMEPALASQAYIDASLPIGYHQTISQPYIVARM 146

Query: 177 IELMRQNRHGGRLERVLEIGTGCGYQAAVLSRVAGEVYSIERIKPLHELAKTNLRPLRVA 236
           IE+MR N+ GG L RVLEIGTGCGYQAAVLS VA EVYSIERIK LHELAK NLRP+RVA
Sbjct: 147 IEVMRNNQQGGVLNRVLEIGTGCGYQAAVLSLVAKEVYSIERIKGLHELAKANLRPMRVA 206

Query: 237 NIRLHYGDGMLGLPQVAPFDGIILAAAGLEVPQALLEQLAIGGRLVAPVGERQQVLELIE 296
           NIRLHYGDGMLGLPQ APFDGIILAAAGLEVPQALLEQ+ IGGRLVAPVGER QVL+LIE
Sbjct: 207 NIRLHYGDGMLGLPQAAPFDGIILAAAGLEVPQALLEQMTIGGRLVAPVGERHQVLQLIE 266

Query: 297 RVGQRDWRRTTLEQCHFVPLRPGTV 321
           RV + +W+ +TLE CHFVPLRPGTV
Sbjct: 267 RVSKFEWKSSTLEDCHFVPLRPGTV 291


>gi|152981335|ref|YP_001354622.1|
           protein-L-isoaspartate(D-aspartate) O-methyltransferase
           [Janthinobacterium sp. Marseille]
          Length = 216

 Score = 86.3 bits (212), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 59/178 (33%), Positives = 93/178 (52%), Gaps = 6/178 (3%)

Query: 141 RHMFVEPGLASQAYIDASLPIGHHQTISQPYIVARMIELMRQNRHGGRLERVLEIGTGCG 200
           R  FV     + A+ D+ +P+ H +++  P + AR+++ +   +H    E VLEIG G G
Sbjct: 34  REAFVPLAYRALAFADSEIPLPHGESMMTPKLEARIMQELAVKKH----ENVLEIGAGSG 89

Query: 201 YQAAVLSRVAGEVYSIERIKPLHELAKTNLRPLRVANIRLHYGDGMLGLPQVAPFDGIIL 260
           Y AA+L+  A  V ++E    L  LA+ NL    V+N  +  GDG+ G    A +D I++
Sbjct: 90  YMAALLAHKARHVTTVEIEPELKALAEKNLADYGVSNATVELGDGVQGWGD-ANYDVIVV 148

Query: 261 AAAGLEVPQALLEQLAIGGRLVAPVGER-QQVLELIERVGQRDWRRTTLEQCHFVPLR 317
           + +   VP+ALL  L +GGRL+A VG       ++I R     +    L +    PLR
Sbjct: 149 SGSVPSVPEALLANLKVGGRLLAVVGAAPAMTAQIITRTSDVAFSTVGLFETLLKPLR 206


  Database: BlastDatabases/707/707
    Posted date:  Apr 13, 2011 12:58 PM
  Number of letters in database: 1,221,021
  Number of sequences in database:  3697
  
Lambda     K      H
   0.318    0.132    0.379 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3697
Number of Hits to DB: 612,482
Number of extensions: 22929
Number of successful extensions: 98
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 96
Number of HSP's successfully gapped: 2
Length of query: 321
Length of database: 1,221,021
Length adjustment: 83
Effective length of query: 238
Effective length of database: 914,170
Effective search space: 217572460
Effective search space used: 217572460
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 129 (54.3 bits)