BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.2927.p
         (407 letters)

Database: BlastDatabases/707/707 
           3697 sequences; 1,221,021 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|152980879|ref|YP_001353820.1| hypothetical protein mma_2130 [...   731   0.0  

>gi|152980879|ref|YP_001353820.1| hypothetical protein mma_2130
           [Janthinobacterium sp. Marseille]
          Length = 387

 Score =  731 bits (1888), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 340/387 (87%), Positives = 368/387 (95%), Gaps = 2/387 (0%)

Query: 20  TALTNLLDMDPAQLVAYCGELGEKPFRAKQLQRWIHQFGVADFDQMTDLAKSLRDKLKTR 79
           T LTNLLD+DPAQL+AYCGELGEKPFRAKQLQRWIHQFG +DFD MTDLAKSLRDKL TR
Sbjct: 2   TTLTNLLDLDPAQLIAYCGELGEKPFRAKQLQRWIHQFGASDFDAMTDLAKSLRDKLATR 61

Query: 80  AEVRAPAIISDHTSTDGTRKWLVDVGQGNAVETVFIPEENRGTLCVSTQAGCAVNCRFCS 139
           A + APA+ISDHTS DGTRKWLVDVGQGNAVETVFIPEENRGTLC+STQAGCAVNCRFCS
Sbjct: 62  AIIAAPAVISDHTSADGTRKWLVDVGQGNAVETVFIPEENRGTLCISTQAGCAVNCRFCS 121

Query: 140 TGKQGFNRNLTVAEIIGQLWMAEFELRKTKGIEGGPKGERQITNVVMMGMGEPLLNFEPT 199
           TGKQGFNRNL+V E+IGQLWMAEFELR+TKGIE GPKGERQITNVVMMGMGEPLLN+EPT
Sbjct: 122 TGKQGFNRNLSVGEVIGQLWMAEFELRRTKGIEPGPKGERQITNVVMMGMGEPLLNYEPT 181

Query: 200 VTALRLMLDDNAYGLSRRRVTLSTSGVVPMIDKLSQECPVALAVSLHASNDALRDSLIPL 259
           VTAL+LMLDDNAYGLSRRRVTLSTSGVVPMIDKLSQ+C VALAVSLHASNDALRD L+PL
Sbjct: 182 VTALKLMLDDNAYGLSRRRVTLSTSGVVPMIDKLSQDCAVALAVSLHASNDALRDGLVPL 241

Query: 260 NRKHPLRELMLACKRYLEFAPRDFITFEYCMLDGVNDTDTHARELVALVKEGETAIPCKF 319
           N+K+PL ELM ACKRYLEFAPRDF+TFEYCMLDGVND+D HAREL+ALV++ +  +PCKF
Sbjct: 242 NKKYPLVELMAACKRYLEFAPRDFVTFEYCMLDGVNDSDQHARELIALVRQAD--VPCKF 299

Query: 320 NLIPFNPFPESGLKRSHNPRIKAFAQILMDAGIVTTIRKTRGDDIDAACGQLAGEVKDRT 379
           NLIPFNPFPESGL RSHNPRIKAFAQ+LMDAGIVTT+RKTRGDDIDAACGQLAGEV+DRT
Sbjct: 300 NLIPFNPFPESGLTRSHNPRIKAFAQVLMDAGIVTTVRKTRGDDIDAACGQLAGEVQDRT 359

Query: 380 RVQERMQKMAEYQSKFGKDFGRIVEIS 406
           RVQ+RM+KMAEYQ KFGK+FGRIVEIS
Sbjct: 360 RVQDRMKKMAEYQEKFGKNFGRIVEIS 386


  Database: BlastDatabases/707/707
    Posted date:  Apr 13, 2011 12:58 PM
  Number of letters in database: 1,221,021
  Number of sequences in database:  3697
  
Lambda     K      H
   0.321    0.136    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3697
Number of Hits to DB: 922,462
Number of extensions: 37643
Number of successful extensions: 95
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 94
Number of HSP's successfully gapped: 1
Length of query: 407
Length of database: 1,221,021
Length adjustment: 85
Effective length of query: 322
Effective length of database: 906,776
Effective search space: 291981872
Effective search space used: 291981872
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 131 (55.1 bits)