BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.2926.p
         (357 letters)

Database: BlastDatabases/707/707 
           3697 sequences; 1,221,021 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|152980880|ref|YP_001353818.1| hypothetical protein mma_2128 [...   175   4e-45

>gi|152980880|ref|YP_001353818.1| hypothetical protein mma_2128
           [Janthinobacterium sp. Marseille]
          Length = 343

 Score =  175 bits (444), Expect = 4e-45,   Method: Compositional matrix adjust.
 Identities = 134/332 (40%), Positives = 181/332 (54%), Gaps = 22/332 (6%)

Query: 28  GAMLASARQKKGWSVEQVASLVKLAPRQIQAIEADNYAALPGLAVARGFVRSYAKVLGLD 87
           GA LA+ RQ++GW+VEQVA+ + LA RQIQA+E DNYAALPG+ + RGF+RSY+KVL +D
Sbjct: 32  GAQLATLRQERGWTVEQVANQLNLASRQIQALEEDNYAALPGMVIVRGFIRSYSKVLRVD 91

Query: 88  AHALAAAMPQETAVQQRDHIVPQHS-LSTPFSEGPLPAMMMSTRGNSSVLPILAGVVVVA 146
              + A +  +T       + P+ S LS  FSE  L  +  + RG  S   +  G++VV 
Sbjct: 92  PAPILAGIKDDTVAPA--ILPPERSPLSASFSETKL--LSSNQRGLRSKAVLGGGILVVL 147

Query: 147 VLAGAAAVRWTELGANVPQLAWLKAHHSETSAAPETTEATQGVEVASNDTPVNARVETIT 206
            L   A             + WL   H    +  +  E    +E++  D    A VET  
Sbjct: 148 GLLAYAG----------QHMGWL--SHGPAGSPAKVEEKLAPIELS--DAAPQAVVETA- 192

Query: 207 PPPAEASATQAAPAPEA-PAPVAAQPAPTLAAAPAASEPASTASPAAVAPTSPAASSTSM 265
            PP E         PE  PA  A   A T+AAA   + PA  +   A    +P       
Sbjct: 193 -PPLEVLEVTETKTPEVKPAETAKPVAETVAAAAKPTVPAPASVATAAPAVAPLTPVAKP 251

Query: 266 ASTTVPSGLNIVNSKDLLRLTFREDSWVEIRRADKSTIISRLLKAGTTETFDVSDATTLI 325
           A+   P  +  V+SK+ L +  REDSWVEI+ AD S I+SRLLKAG++E   V+   +++
Sbjct: 252 AAVAAPKPVVPVDSKNALAINVREDSWVEIKGADNSVILSRLLKAGSSEAVAVTGPVSVV 311

Query: 326 IGNAAGVDATLRGQPLDLKTPGGSNVARLNLN 357
           IGNAAGVD TLRG P+D+ T   SNVARLNL 
Sbjct: 312 IGNAAGVDVTLRGAPVDVVTGNSSNVARLNLK 343


  Database: BlastDatabases/707/707
    Posted date:  Apr 13, 2011 12:58 PM
  Number of letters in database: 1,221,021
  Number of sequences in database:  3697
  
Lambda     K      H
   0.310    0.122    0.339 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3697
Number of Hits to DB: 575,944
Number of extensions: 19356
Number of successful extensions: 72
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 71
Number of HSP's successfully gapped: 1
Length of query: 357
Length of database: 1,221,021
Length adjustment: 84
Effective length of query: 273
Effective length of database: 910,473
Effective search space: 248559129
Effective search space used: 248559129
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 130 (54.7 bits)