BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.2924.p
         (453 letters)

Database: BlastDatabases/707/707 
           3697 sequences; 1,221,021 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|152980083|ref|YP_001353816.1| histidyl-tRNA synthetase [Janth...   820   0.0  

>gi|152980083|ref|YP_001353816.1| histidyl-tRNA synthetase
           [Janthinobacterium sp. Marseille]
          Length = 449

 Score =  820 bits (2117), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 385/452 (85%), Positives = 420/452 (92%), Gaps = 4/452 (0%)

Query: 1   MSEQKKVEKIVGVKGMNDILPADAPLWELFENTVQSVLKSYGFQQIRTPIVEPTALFARG 60
           MS+ KK EKIVGVKGMNDILPADAPLWELFENTV +VLKSYGFQQIRTPIVEPTALFARG
Sbjct: 1   MSDTKKTEKIVGVKGMNDILPADAPLWELFENTVHTVLKSYGFQQIRTPIVEPTALFARG 60

Query: 61  LGEVTDIVEKEMYSFTDSMNGDNLTLRPENTAGVVRAALEHNLTYDGPKRLWYVGPMFRH 120
           LGEVTDIVEKEMYSFTDSMNGD LTLRPE TAGVVRAALEHNLTYDGPKRLWY GPMFRH
Sbjct: 61  LGEVTDIVEKEMYSFTDSMNGDQLTLRPECTAGVVRAALEHNLTYDGPKRLWYAGPMFRH 120

Query: 121 ERPQRGRYRQFHQVGAEAVGFSGPDIDAELIMMCQRLWDDLGLSDIRLELNSIGNAEERN 180
           ERPQRGRYRQFHQ+GAEA+GF+GPDIDAELIMMCQRLWDDLGL D+RLELNSIGNAEERN
Sbjct: 121 ERPQRGRYRQFHQIGAEAIGFAGPDIDAELIMMCQRLWDDLGLQDVRLELNSIGNAEERN 180

Query: 181 KHRADLIAYFEQHKELLDTDAQRRLHANPLRILDTKNPSMQEMVNAAPKLLDYLGEESRA 240
           KHRADLIAYFE++ +LLDT+AQ+RLH+NPLRILDTKNP+MQ+MVNAAPKLLDYLGEESRA
Sbjct: 181 KHRADLIAYFEKNADLLDTEAQKRLHSNPLRILDTKNPTMQDMVNAAPKLLDYLGEESRA 240

Query: 241 HFEGVQKILRHNNIPFTINPRLVRGMDYYNRTVFEWVTDQLGSQGTVCGGGRYDPLIEMF 300
           HFEGVQKILRHN IPFTINPRLVRGMDYYNRTVFEWVTDQLGSQGTVCGGGRYDPL+EMF
Sbjct: 241 HFEGVQKILRHNAIPFTINPRLVRGMDYYNRTVFEWVTDQLGSQGTVCGGGRYDPLVEMF 300

Query: 301 GGKPTPACGFAMGVERLLELMKANGEQYAPNQCDVYLVHQGEDAQLQSFVLAERLRTAGL 360
           GGKPTPACGFAMGVERLLELMKA+GEQ+APNQCDVY+VHQGE+AQLQ+ V+AERLR AGL
Sbjct: 301 GGKPTPACGFAMGVERLLELMKASGEQFAPNQCDVYIVHQGEEAQLQASVVAERLRDAGL 360

Query: 361 DVVLHCASSNGGGSFKAQMKRADASGAAFAVIIGEDELKAATATVKHLREGNAEEGRANQ 420
           DVVLHCA++ G GSFK+QMKRAD SGAA+AVIIGEDE+   TA VK +R     E   NQ
Sbjct: 361 DVVLHCAAATGIGSFKSQMKRADGSGAAYAVIIGEDEIAQGTAVVKEMRNA---EAAGNQ 417

Query: 421 SNMAFDGVVDYIVEQIVGDHDHDHDHDHVHYH 452
           +++ F+G+ DY+V+QIVG HDH HD +HVHYH
Sbjct: 418 ASVPFEGIADYLVDQIVGAHDHAHD-EHVHYH 448


  Database: BlastDatabases/707/707
    Posted date:  Apr 13, 2011 12:58 PM
  Number of letters in database: 1,221,021
  Number of sequences in database:  3697
  
Lambda     K      H
   0.319    0.136    0.407 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3697
Number of Hits to DB: 1,077,951
Number of extensions: 47311
Number of successful extensions: 105
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 106
Number of HSP's successfully gapped: 1
Length of query: 453
Length of database: 1,221,021
Length adjustment: 86
Effective length of query: 367
Effective length of database: 903,079
Effective search space: 331429993
Effective search space used: 331429993
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 131 (55.1 bits)