BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.2923.p
         (214 letters)

Database: BlastDatabases/707/707 
           3697 sequences; 1,221,021 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|152980881|ref|YP_001353815.1| hypothetical protein mma_2125 [...   295   1e-81

>gi|152980881|ref|YP_001353815.1| hypothetical protein mma_2125
           [Janthinobacterium sp. Marseille]
          Length = 216

 Score =  295 bits (755), Expect = 1e-81,   Method: Compositional matrix adjust.
 Identities = 146/213 (68%), Positives = 175/213 (82%)

Query: 1   MAYDLEEQEQLDSIKAWWAKYGNLVTWALIIALAGYAAWTGWNTYQGRQSAQASVLYEEQ 60
           MAYD  EQEQL ++K+WW +YGNLVTW LI+ L  YAAW GW  YQ  Q+ QA  LYEE 
Sbjct: 1   MAYDHAEQEQLATLKSWWNQYGNLVTWLLIVVLGAYAAWAGWGYYQRSQATQAGQLYEEL 60

Query: 61  QKALAAKDNAKVQRAATDIQDKFSGTAYAEMSALVAAKSAFDANDNETAKKQLQWVIDHG 120
           QKA+AA+D  KVQRAATD++ KF+GTAYA+MSAL AAKSAFD+ND +TAK QLQWVID G
Sbjct: 61  QKAVAAQDKEKVQRAATDMEAKFAGTAYAQMSALAAAKSAFDSNDFKTAKAQLQWVIDKG 120

Query: 121 RGKEYKAIAAVRLAGVLLDTKSYEEALKVLAGDYPAQFAGAIADRKGDVLLAQGKRDEAR 180
           +  EYKA+A VRLAG+LLD K+Y+E LKVLAG++PAQFA  ++DRKGD+L+AQ K +EAR
Sbjct: 121 QSDEYKAVAKVRLAGILLDEKAYDEGLKVLAGEFPAQFANVVSDRKGDILVAQNKLEEAR 180

Query: 181 TAYKLALEKSDAKDPGRQLIQIKLDAIGGEAPK 213
            AY+ ALEK+DAK+P RQLIQIKLDAIGG A K
Sbjct: 181 AAYQTALEKTDAKNPARQLIQIKLDAIGGAAVK 213


  Database: BlastDatabases/707/707
    Posted date:  Apr 13, 2011 12:58 PM
  Number of letters in database: 1,221,021
  Number of sequences in database:  3697
  
Lambda     K      H
   0.313    0.127    0.364 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3697
Number of Hits to DB: 500,327
Number of extensions: 19224
Number of successful extensions: 63
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 63
Number of HSP's successfully gapped: 1
Length of query: 214
Length of database: 1,221,021
Length adjustment: 79
Effective length of query: 135
Effective length of database: 928,958
Effective search space: 125409330
Effective search space used: 125409330
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 127 (53.5 bits)