BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.2918.p
         (451 letters)

Database: BlastDatabases/707/707 
           3697 sequences; 1,221,021 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|152981571|ref|YP_001353810.1| membrane protease subunit HflK ...   536   e-154

>gi|152981571|ref|YP_001353810.1| membrane protease subunit HflK
           [Janthinobacterium sp. Marseille]
          Length = 424

 Score =  536 bits (1382), Expect = e-154,   Method: Compositional matrix adjust.
 Identities = 280/387 (72%), Positives = 319/387 (82%), Gaps = 17/387 (4%)

Query: 11  VKFSLNDPQWGRGSQNDNRDNQNNGNNGDKRPEKPSGNDDGPPDLDQLWRDFNQRIAGML 70
           +KFSLNDP+WGRGS +DN  NQ+N     KRP      +DGPPDLDQLWRDFNQR++ + 
Sbjct: 1   MKFSLNDPRWGRGS-DDNNKNQDN-----KRP------NDGPPDLDQLWRDFNQRLSNIF 48

Query: 71  GRKGGGSDGGNGGGGFN-----RGDVKGAGIGVGVIAIIVVFLWLASGFFIVQEGQTAVV 125
           G K  G  G  G          + D++GAGIG  +IA IV FLWL SGFFIVQEGQT VV
Sbjct: 49  GNKKNGGGGNGGDSSGGGMGGFKPDMRGAGIGAAIIAGIVAFLWLVSGFFIVQEGQTGVV 108

Query: 126 TTFGRYSHTTLPGFNWRWPYPIQGHEIVNMSQVRTAEIGYRGNVRNKQLKESLMLTDDEN 185
            TFG+YSH T  GFNWRWP PIQ HEIVN+SQVRT E+GYRGNV+NKQ +ESLMLT+DEN
Sbjct: 109 MTFGKYSHMTPAGFNWRWPTPIQSHEIVNVSQVRTVEVGYRGNVKNKQQQESLMLTEDEN 168

Query: 186 IIDIQFAVQYKLKNAAEWLFNNRDPDDSVRQVAEAAIREIVGRSKMDFVLYEGREKVALD 245
           IIDIQFAVQY LKNA++W+FNNR+ ++ V+QVAE AIRE+VGRSKMDFVLYEGREK+A D
Sbjct: 169 IIDIQFAVQYTLKNASDWVFNNREQEEMVKQVAETAIREVVGRSKMDFVLYEGREKIAFD 228

Query: 246 VSQRMQQILDRYKSGVQITNVTMQGVQPPEQVQAAFDDAVKAGQDRERLKNEGQAYANDV 305
            SQ MQQI+DRYKSGVQITNVTMQGVQPPEQVQA+FDDAVKAGQDRER KNEGQAYANDV
Sbjct: 229 SSQLMQQIVDRYKSGVQITNVTMQGVQPPEQVQASFDDAVKAGQDRERQKNEGQAYANDV 288

Query: 306 IPRASGAASRLLEEAEAYRSRVVANAEGDASRFTQVQEAYAKAPAVTRDRMYLETMQQIF 365
           IPRA GAASRLL+E+EAYRS V ANA+G+ASRF QV   Y KAPAVTRDRMYLETMQ+IF
Sbjct: 289 IPRARGAASRLLQESEAYRSSVTANAQGEASRFKQVLVEYQKAPAVTRDRMYLETMQKIF 348

Query: 366 ANTTKVMVDVKNGSNLLYLPLDKLIQQ 392
           ++TTKVMVD K  ++L+YLPLDKLI Q
Sbjct: 349 SSTTKVMVDSKGNNSLIYLPLDKLISQ 375


  Database: BlastDatabases/707/707
    Posted date:  Apr 13, 2011 12:58 PM
  Number of letters in database: 1,221,021
  Number of sequences in database:  3697
  
Lambda     K      H
   0.315    0.132    0.378 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3697
Number of Hits to DB: 806,202
Number of extensions: 27512
Number of successful extensions: 97
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 93
Number of HSP's successfully gapped: 2
Length of query: 451
Length of database: 1,221,021
Length adjustment: 86
Effective length of query: 365
Effective length of database: 903,079
Effective search space: 329623835
Effective search space used: 329623835
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 131 (55.1 bits)