BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.2911.p (393 letters) Database: BlastDatabases/707/707 3697 sequences; 1,221,021 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|152981192|ref|YP_001353300.1| major facilitator transporter [... 324 7e-90 gi|152981427|ref|YP_001351784.1| major facilitator transporter [... 133 2e-32 gi|152981201|ref|YP_001353559.1| major facilitator superfamily d... 108 6e-25 gi|152981547|ref|YP_001354871.1| major facilitator transporter [... 76 4e-15 gi|152982589|ref|YP_001352814.1| major facilitator superfamily m... 58 1e-09 >gi|152981192|ref|YP_001353300.1| major facilitator transporter [Janthinobacterium sp. Marseille] Length = 390 Score = 324 bits (830), Expect = 7e-90, Method: Compositional matrix adjust. Identities = 184/382 (48%), Positives = 248/382 (64%) Query: 1 MPIALWALTISAFAIGTTEFVIMGLLPEVAANLGVSLSSAGLLVTGYALGVFVGAPLVTA 60 MP+AL L +SAFAIGTTEFVIMGLLP+VA +L VS+ SAG L++GYALGV +GAP++ Sbjct: 1 MPLALVILALSAFAIGTTEFVIMGLLPDVARSLSVSIPSAGWLISGYALGVAIGAPIMAV 60 Query: 61 TTGRLPRKTLLIALMVVFVIGNLACAMAPGYVTLMIGRVVASFAHGAFFGVGSVVATSLV 120 T LPRK L+ LM +F++GN+ CA+A Y LM+ R++ + HGAFFG+GSVVA SLV Sbjct: 61 ATASLPRKRALLLLMGIFIVGNVLCAVATNYNFLMVARIITALCHGAFFGIGSVVAASLV 120 Query: 121 PKEKQASAIALMFTGLTVANVLGVPFGTWLGQSYGWRATFWAVTAIGVIALAATAVLVPR 180 P+ ++ASA+ALMFTGLT+ANVLGVP GT LGQ GW+ FWAV +GV++L ++P Sbjct: 121 PENRKASAVALMFTGLTLANVLGVPLGTALGQVAGWQMPFWAVAVLGVLSLIGLWRVMPV 180 Query: 181 SQGGQEADFGKEVRVLMRPQVMLGLLMTVLGFGGVFAAFTYIAPILTDISGFPASAVSPI 240 ++ ++ D E+ L + L T+L FA FTY+AP+L D++ V+ Sbjct: 181 NRHEEKTDLRAEIGQLRNAGLWAALSTTMLFSAATFALFTYVAPLLEDVTHLSPHGVTWT 240 Query: 241 LLLFGLGLVIGNLAGGKLADKKLMATLLGSLVLLAVVLVLFGLTNGHQIAAIVGVGLMGM 300 L L GLGL +GN GG+LAD +L L G ++LAVV L T+ I + + L M Sbjct: 241 LFLIGLGLTVGNYIGGRLADWRLGTALTGIFMVLAVVSSLVRWTSPSLIPVEINLFLWAM 300 Query: 301 AAFATVPPLQMRVLEKATGAPNLASSANIAAFNLGNAAGAWLGGVTIDHGPGLHAVPYVA 360 +FA VP LQ+ V+ APNL ++ NI AFN+GNA GAW+GG I G GL AVP A Sbjct: 301 VSFAAVPGLQVNVMIFGKAAPNLVATLNIGAFNVGNALGAWVGGSVISAGFGLQAVPLAA 360 Query: 361 ALLPLAGIVVALVSWKMDASPA 382 +L L ++ VS ++ A Sbjct: 361 GVLALTAVLAMRVSMRLAGDEA 382 >gi|152981427|ref|YP_001351784.1| major facilitator transporter [Janthinobacterium sp. Marseille] Length = 384 Score = 133 bits (335), Expect = 2e-32, Method: Compositional matrix adjust. Identities = 101/319 (31%), Positives = 173/319 (54%), Gaps = 2/319 (0%) Query: 1 MPIALWALTISAFAIGTTEFVIMGLLPEVAANLGVSLSSAGLLVTGYALGVFVGAPLVTA 60 MP+ ++ L ++ F++ T+EF++ G++P + GVS++ G L++ YA+G+ +G P++T Sbjct: 1 MPVVVYILGLTIFSLTTSEFMVAGMMPSLTQAFGVSVTQIGYLISFYAIGMVIGGPVLTV 60 Query: 61 --TTGRLPRKTLLIALMVVFVIGNLACAMAPGYVTLMIGRVVASFAHGAFFGVGSVVATS 118 R+ K L+ L++++ + A + Y + R V A A FG + Sbjct: 61 GLLKLRVSNKKALLCLLLLYALAQAVAAASNSYDIMAGARFVTGVAAAACFGASLAICGE 120 Query: 119 LVPKEKQASAIALMFTGLTVANVLGVPFGTWLGQSYGWRATFWAVTAIGVIALAATAVLV 178 +V +A A +++ GL +ANV+GVP T + Q +GWRA+FW V + + +V Sbjct: 121 VVAVGSRARAASIVVGGLMLANVVGVPAATLIDQYWGWRASFWLVVMLVAVCSLLIIFMV 180 Query: 179 PRSQGGQEADFGKEVRVLMRPQVMLGLLMTVLGFGGVFAAFTYIAPILTDISGFPASAVS 238 PRS E+ +P + L + L G FAAF+Y APILT+++GF A+A+ Sbjct: 181 PRSHAAAAPSLDAELAEFKKPALWAAYLTSGLIIGAAFAAFSYFAPILTEVTGFGAAAIP 240 Query: 239 PILLLFGLGLVIGNLAGGKLADKKLMATLLGSLVLLAVVLVLFGLTNGHQIAAIVGVGLM 298 +L L+G+ VIGN+ G+ ADK L L LA L +F L +QI +++ + ++ Sbjct: 241 WLLALYGVANVIGNMVIGRYADKYTFPILGWGLAGLATALAVFALFAQNQIISVLALIVV 300 Query: 299 GMAAFATVPPLQMRVLEKA 317 G+ A P + R+L+ A Sbjct: 301 GLIGVALNPAMISRILKVA 319 >gi|152981201|ref|YP_001353559.1| major facilitator superfamily drug efflux antiporter [Janthinobacterium sp. Marseille] Length = 408 Score = 108 bits (270), Expect = 6e-25, Method: Compositional matrix adjust. Identities = 105/344 (30%), Positives = 167/344 (48%), Gaps = 2/344 (0%) Query: 7 ALTISAFAIGTTEFVIMGLLPEVAANLGVSLSSAGLLVTGYALGVFVGAPL-VTATTGRL 65 +L + F + T EF+ LL +A +LGVS +AG VT AL V GA L + T Sbjct: 35 SLALGVFGLVTAEFLPASLLTAMANDLGVSDGAAGQAVTATAL-VGAGAALMIPVLTRNF 93 Query: 66 PRKTLLIALMVVFVIGNLACAMAPGYVTLMIGRVVASFAHGAFFGVGSVVATSLVPKEKQ 125 RK +++ L ++ V+ N+ A A L++ RV+ A G F+ + + +A LVP Sbjct: 94 DRKRVILTLTILLVLSNVLAATAENLPVLLVSRVLLGIALGGFWSMAAALAMRLVPDNLF 153 Query: 126 ASAIALMFTGLTVANVLGVPFGTWLGQSYGWRATFWAVTAIGVIALAATAVLVPRSQGGQ 185 A A++ + TG++VA V P G ++G +GWR+ F A + +I L +P Sbjct: 154 ARAMSFILTGVSVATVGAAPIGAYMGDLWGWRSAFIAAGIVSIITLVVQFFAIPSLPPKD 213 Query: 186 EADFGKEVRVLMRPQVMLGLLMTVLGFGGVFAAFTYIAPILTDISGFPASAVSPILLLFG 245 +L R V + L +L G FA FTYI P++ I+ SA+S +LL +G Sbjct: 214 NPSLKILFELLRRTNVRVALFAVLLVISGHFAGFTYIRPLMEHITHLSVSAISAVLLGYG 273 Query: 246 LGLVIGNLAGGKLADKKLMATLLGSLVLLAVVLVLFGLTNGHQIAAIVGVGLMGMAAFAT 305 +G GN AGG +A++ ++ L+A++ + A + + L G A A Sbjct: 274 IGGFFGNFAGGFIAERSERYAVVFGGTLIALLAATLWIAGSSATVAAIAIALWGFAFGAF 333 Query: 306 VPPLQMRVLEKATGAPNLASSANIAAFNLGNAAGAWLGGVTIDH 349 Q ++ A A +AAF + A+GA GG+ +DH Sbjct: 334 PVGFQTWIVRAAPDQAEAAGGLMVAAFQIAIASGAIGGGILVDH 377 >gi|152981547|ref|YP_001354871.1| major facilitator transporter [Janthinobacterium sp. Marseille] Length = 417 Score = 75.9 bits (185), Expect = 4e-15, Method: Compositional matrix adjust. Identities = 66/256 (25%), Positives = 110/256 (42%), Gaps = 17/256 (6%) Query: 19 EFVIMGLL-PEVAANLGVSLSSAGLLVTGYALGVFVGAPLVTATTGRLPRKTLLIALMVV 77 +F+IM L P++ L + GLL++ Y + L R R+ L++ L Sbjct: 30 DFMIMMPLGPQLIRVLHIDTHQFGLLLSSYTFTAAASSLLAATYIDRFDRRKLMLVLYAC 89 Query: 78 FVIGNLACAMAPGYVTLMIGRVVASFAHGAFFGV-GSVVAT---SLVPKEKQASAIALMF 133 F+I L C +AP + L+I R +A GAF G+ G +V T ++P E++ A+ + Sbjct: 90 FIIATLCCGLAPNFTFLLIARALA----GAFGGILGGLVQTMVADVIPFERRGKALGTVM 145 Query: 134 TGLTVANVLGVPFGTWLGQSY---GWRATFWAVTAIGVIALAATAVLVPRSQGGQEAD-- 188 +++ V GVP G L ++ GWRA F+ + + I L+P Sbjct: 146 AAFSISTVAGVPLGLLLASTFTTLGWRAPFFFIVLLAGIFWVIGYKLLPNMTAHLHNKPL 205 Query: 189 ---FGKEVRVLMRPQVMLGLLMTVLGFGGVFAAFTYIAPILTDISGFPASAVSPILLLFG 245 F + V P+ + + F YIA +T G P S ++ + L G Sbjct: 206 GNVFQRIFAVAREPRHLTAFAFIAMIMMAGFTVIPYIALYMTTNVGLPESFITVVYLCGG 265 Query: 246 LGLVIGNLAGGKLADK 261 + G++ADK Sbjct: 266 AATFFTSQLIGRMADK 281 >gi|152982589|ref|YP_001352814.1| major facilitator superfamily multidrug resistance B translocase [Janthinobacterium sp. Marseille] Length = 517 Score = 57.8 bits (138), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 43/151 (28%), Positives = 72/151 (47%), Gaps = 4/151 (2%) Query: 26 LPEVAANLGVSLSSAGLLVTGYALGVFVGAPLVTATTGRLPRKTLLIALMVVFVIGNLAC 85 +P ++ +LGVS ++T +++ + PL T R+ + L I +++FV+ + C Sbjct: 42 IPAISGDLGVSPQQGTWVITSFSVANAISVPLTGWLTQRIGQVRLFIGSILLFVLASCLC 101 Query: 86 AMAPGYVTLMIGRVVASFAHGAFFGVGSVVATSLVPKEKQASAIALMFTGLT--VANVLG 143 AP L+ RV+ G + + S P K S +AL F G+T VA ++G Sbjct: 102 GFAPSIEILIAARVLQGAVAGPMIPLSQALLLSSYPPAK--SGMALAFWGMTTLVAPIMG 159 Query: 144 VPFGTWLGQSYGWRATFWAVTAIGVIALAAT 174 G W+ +Y W F+ IG+ A AT Sbjct: 160 PLLGGWISDNYTWPWIFFINIPIGLFAAWAT 190 Database: BlastDatabases/707/707 Posted date: Apr 13, 2011 12:58 PM Number of letters in database: 1,221,021 Number of sequences in database: 3697 Lambda K H 0.325 0.139 0.411 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3697 Number of Hits to DB: 736,933 Number of extensions: 26362 Number of successful extensions: 196 Number of sequences better than 1.0e-08: 15 Number of HSP's gapped: 184 Number of HSP's successfully gapped: 15 Length of query: 393 Length of database: 1,221,021 Length adjustment: 85 Effective length of query: 308 Effective length of database: 906,776 Effective search space: 279287008 Effective search space used: 279287008 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.0 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.6 bits) S2: 130 (54.7 bits)