BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.2910.p (293 letters) Database: BlastDatabases/707/707 3697 sequences; 1,221,021 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|152980333|ref|YP_001353265.1| LysR family transcriptional reg... 353 6e-99 gi|152980836|ref|YP_001354012.1| LysR family transcriptional reg... 160 8e-41 gi|152980832|ref|YP_001354031.1| LysR family transcriptional reg... 151 6e-38 gi|152979810|ref|YP_001352746.1| LysR family transcriptional reg... 147 6e-37 gi|152982683|ref|YP_001354316.1| LysR family transcriptional reg... 145 2e-36 >gi|152980333|ref|YP_001353265.1| LysR family transcriptional regulator [Janthinobacterium sp. Marseille] Length = 293 Score = 353 bits (907), Expect = 6e-99, Method: Compositional matrix adjust. Identities = 184/293 (62%), Positives = 228/293 (77%) Query: 1 MSIQSEELRTFVAVVEAGTLSSAAEVLEQTTSGVSRALSRLEEKLGASLLTRTTRRMELT 60 M I S++L+TFVAV+++GTL +AA+ L QTTS VSRAL+RLEEKL +LLTRTTRRMELT Sbjct: 1 MDINSDDLKTFVAVIDSGTLGAAAQHLGQTTSAVSRALARLEEKLATTLLTRTTRRMELT 60 Query: 61 EEGEALLHQARAILGAMEQAEDTVRMRSRKPVGKLRVDAAVPFMLHCVVPHVGAFRAAYP 120 +EG LL +ARAIL A+++AE+++R+R ++P G+LR+DAA PF+LH +VPHV FR YP Sbjct: 61 DEGRLLLTKARAILAALDEAEESIRVRRQRPSGRLRIDAASPFILHVIVPHVAEFRELYP 120 Query: 121 DIELELTTNDRFIDLVEQRADIAIRIGELQDSTLHARPLSSARLNIVASPDYLARCGTPE 180 DI LELT+ND+ DL+E R DIAIR+GEL DSTLHARPL S + I+ASPDYL R G P+ Sbjct: 121 DITLELTSNDQIADLLEHRTDIAIRVGELTDSTLHARPLRSGAMAILASPDYLRRHGIPK 180 Query: 181 SVEALEQHQLIGFSQPDILNHWPLRHTAGDRYQTRPAIRASSGETIRHLALQGQGIACLS 240 L QH+ +GF Q + N WPLRH G+ T PAI ASSGET+R LAL GQGIACLS Sbjct: 181 KPADLAQHETLGFLQYENGNSWPLRHDGGEWLATTPAIYASSGETLRALALAGQGIACLS 240 Query: 241 SFMTDADIAAGHLVRLLDHYDSGFRQKISAVYYHNTQLSRRISCFLDFLQCKL 293 FMT DIAAG LV +L Y +G+++ I AVYY NTQLSRRISCFL+FLQ K+ Sbjct: 241 EFMTKQDIAAGTLVPILAKYYTGYQRPIHAVYYRNTQLSRRISCFLEFLQKKM 293 >gi|152980836|ref|YP_001354012.1| LysR family transcriptional regulator [Janthinobacterium sp. Marseille] Length = 309 Score = 160 bits (405), Expect = 8e-41, Method: Compositional matrix adjust. Identities = 102/291 (35%), Positives = 148/291 (50%), Gaps = 9/291 (3%) Query: 11 FVAVVEAGTLSSAAEVLEQTTSGVSRALSRLEEKLGASLLTRTTRRMELTEEGEALLHQA 70 F EAG+ ++AA T + VSR++SRLE +LG L RTTR++ LT+ G Q Sbjct: 16 FCLAAEAGSFTAAANTAGVTPAAVSRSISRLEARLGVRLFVRTTRQIRLTDGGRVYFEQC 75 Query: 71 RAILGAMEQAEDTVRMRSRKPVGKLRVDAAVPFMLHCVVPHVGAFRAAYPDIELELTTND 130 R L + AE V KP G LR+ P+ + ++P + FR YPD+++E+ ++ Sbjct: 76 REALAQLVDAERQVSGGQLKPAGLLRISVPTPYGHYRLLPLLPEFRQRYPDVQVEVHISN 135 Query: 131 RFIDLVEQRADIAIRIGELQDSTLHARPLSSARLNIVASPDYLARCGTPESVEALEQHQL 190 R ID E+ D+AIR DS L AR L A L +VA+P YL R G P+++E L++H+ Sbjct: 136 RNIDFAEEAYDLAIRGRAPTDSNLIARKLEEAELVLVAAPSYLKRAGKPKTLEDLQKHEC 195 Query: 191 IGFSQPDILNHWPLRHTAGDRYQTRPA-IRASSGET-------IRHLALQGQGIACLSSF 242 I F P P + Q + I + G + I LA G G+ F Sbjct: 196 IQFELPSTGRRIPWVFHPNGKVQGKAVDIMTNGGYSCAEDVLGIVTLARSGAGLVQTYRF 255 Query: 243 MTDADIAAGHLVRLLDHYDSGFRQKISAVYYHNTQLSRRISCFLDFLQCKL 293 + + D+ G LV LL + + R I +Y H LS R+ F+DFL KL Sbjct: 256 IVEDDLREGRLVELLPQFGATSRPFI-LLYPHARHLSSRVRAFVDFLMEKL 305 >gi|152980832|ref|YP_001354031.1| LysR family transcriptional regulator [Janthinobacterium sp. Marseille] Length = 304 Score = 151 bits (381), Expect = 6e-38, Method: Compositional matrix adjust. Identities = 99/289 (34%), Positives = 153/289 (52%), Gaps = 3/289 (1%) Query: 7 ELRTFVAVVEAGTLSSAAEVLEQTTSGVSRALSRLEEKLGASLLTRTTRRMELTEEGEAL 66 +L F +V+ G+L++ A L T V++ L+ LE++LG LL RTTR M +T EGE Sbjct: 6 DLAFFSVLVKQGSLAAVARELGVTPPAVTKRLANLEQRLGVRLLNRTTRTMSVTHEGEIY 65 Query: 67 LHQARAILGAMEQAEDTVRMRSRKPVGKLRVDAAVPFMLHCVVPHVGAFRAAYPDIELEL 126 L + IL +E+ E V P G LR++A F + P V F YP+IE++L Sbjct: 66 LAEGARILTEIEELERAVSRSRAVPKGLLRINATFGFGRRHIAPAVSDFIEKYPEIEVQL 125 Query: 127 TTNDRFIDLVEQRADIAIRIGELQDSTLHARPLSSARLNIVASPDYLARCGTPESVEALE 186 +DR +L++Q DI IRIGE+ D+ + AR +++ R + A+P Y+ R GTP L+ Sbjct: 126 QLSDRPANLIDQAFDIGIRIGEMPDARIIARKIAANRRLLCAAPAYIKRHGTPSVPRDLQ 185 Query: 187 QHQLIGFSQPD-ILNHWPL-RHTAGDRYQTRPAIRASSGETIRHLALQGQGIACLSSFMT 244 + Q I + D W L + + + R A+ ++ GET AL G GI S + Sbjct: 186 KLQCIVLRENDAAYGSWHLHKGKRQESIKVRGALSSNDGETTLAWALAGHGILMRSQWDV 245 Query: 245 DADIAAGHLVRLLDHYDSGFRQKISAVYYHNTQLSRRISCFLDFLQCKL 293 A + +G LV +L + S I AVY LS +++ F+DF+ + Sbjct: 246 AAYLRSGRLVEVLADW-SLPPSDIYAVYPERLNLSAKVTAFVDFVSARF 293 >gi|152979810|ref|YP_001352746.1| LysR family transcriptional regulator [Janthinobacterium sp. Marseille] Length = 361 Score = 147 bits (372), Expect = 6e-37, Method: Compositional matrix adjust. Identities = 102/288 (35%), Positives = 146/288 (50%), Gaps = 5/288 (1%) Query: 5 SEELRTFVAVVEAGTLSSAAEVLEQTTSGVSRALSRLEEKLGASLLTRTTRRMELTEEGE 64 + EL FV + G LS+AA L+ T ++ L++LE +LG L+ RTTR + LT EGE Sbjct: 62 TSELEFFVLIARLGNLSAAARALDITPPAATKRLAQLESRLGVRLVNRTTRSISLTSEGE 121 Query: 65 ALLHQARAILGAMEQAEDTVRMRSRKPVGKLRVDAAVPFMLHCVVPHVGAFRAAYPDIEL 124 L A IL +++ ED V P G LRV+A + F + P V F YP +E+ Sbjct: 122 IYLGYAARILAEVKEMEDAVSSGGGAPRGLLRVNATLGFGRTAIAPLVSEFVRRYPQVEV 181 Query: 125 ELTTNDRFIDLVEQRADIAIRIGELQDSTLHARPLSSARLNIVASPDYLARCGTPESVEA 184 + +D+ IDLVE D+AIR G L D+ L+AR L S R + ASP YL R GTP+++ Sbjct: 182 QFEVSDKPIDLVENGFDLAIRFGTLPDTRLNARKLMSNRRFLCASPIYLERHGTPQTLAD 241 Query: 185 LEQHQLIGFSQPD-ILNHWPL-RHTAGDRYQTRPAIRASSGETIRHLALQGQGIACLSSF 242 L +H+ I Q D W R + + A+ ++ G+ + AL GI S + Sbjct: 242 LSRHRCITHRQNDEAAATWRFTRDGRNEVIKVESALSSNDGDIVLGWALDAHGILIRSEW 301 Query: 243 MTDADIAAGHLVRLLDHYDSGFRQKISAVYYHNTQ-LSRRISCFLDFL 289 + +G L +L Y VYY N + S R F+DFL Sbjct: 302 DLAKYVKSGRLKIVLPDY--VLPSADLFVYYPNRRNQSTRARAFIDFL 347 >gi|152982683|ref|YP_001354316.1| LysR family transcriptional regulator [Janthinobacterium sp. Marseille] Length = 299 Score = 145 bits (367), Expect = 2e-36, Method: Compositional matrix adjust. Identities = 88/259 (33%), Positives = 148/259 (57%), Gaps = 5/259 (1%) Query: 6 EELRTFVAVVEAGTLSSAAEVLEQTTSGVSRALSRLEEKLGASLLTRTTRRMELTEEGEA 65 +EL F+A++++G+L +A+ L ++ ++RAL LEE++G L+ RTTR + TE G Sbjct: 5 DELEIFIAILDSGSLVAASRKLRRSPPAITRALGTLEERIGTRLIERTTRHLVATEAGLH 64 Query: 66 LLHQARAILGAMEQAEDTVRMRSRKPV-GKLRVDAAVPFMLHCVVPHVGAFRAAYPDIEL 124 L QAR +L EQ TV+ + P+ G L+V A V F V P V ++ YP++ + Sbjct: 65 LAQQARRLLADYEQ---TVQEDASAPLRGTLKVTAPVVFGRRHVAPIVNSYLDQYPEMRV 121 Query: 125 ELTTNDRFIDLVEQRADIAIRIGELQDSTLHARPLSSARLNIVASPDYLARCGTPESVEA 184 EL TNDR +DL+E+ D+ +RIG L D+++ AR + + +VASPDY+ R G P+S+ Sbjct: 122 ELITNDRNLDLIEEGIDVGVRIGSLADTSMVARRVGQVQSVLVASPDYIERRGEPKSIAD 181 Query: 185 LEQHQLIGFSQPDILNHWPLRHTAGDR-YQTRPAIRASSGETIRHLALQGQGIACLSSFM 243 + H +I + + W RH ++ P + + + + A G+G+A + S+ Sbjct: 182 IAHHDVIFTAIREKAPEWRFRHNGREQIVALTPRLIVNEIDAVLLAAKAGRGLARVLSYQ 241 Query: 244 TDADIAAGHLVRLLDHYDS 262 ++ AG L+R+L D+ Sbjct: 242 VADELQAGTLLRVLPKLDA 260 Database: BlastDatabases/707/707 Posted date: Apr 13, 2011 12:58 PM Number of letters in database: 1,221,021 Number of sequences in database: 3697 Lambda K H 0.321 0.133 0.380 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3697 Number of Hits to DB: 597,621 Number of extensions: 23326 Number of successful extensions: 135 Number of sequences better than 1.0e-08: 39 Number of HSP's gapped: 111 Number of HSP's successfully gapped: 39 Length of query: 293 Length of database: 1,221,021 Length adjustment: 82 Effective length of query: 211 Effective length of database: 917,867 Effective search space: 193669937 Effective search space used: 193669937 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 129 (54.3 bits)