BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.2908.p (762 letters) Database: BlastDatabases/707/707 3697 sequences; 1,221,021 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|152981166|ref|YP_001353354.1| penicillin-binding protein 1A [... 96 1e-20 gi|152981042|ref|YP_001355059.1| penicillin-binding protein [Jan... 86 8e-18 gi|152982155|ref|YP_001354651.1| monofunctional biosynthetic pep... 63 6e-11 >gi|152981166|ref|YP_001353354.1| penicillin-binding protein 1A [Janthinobacterium sp. Marseille] Length = 807 Score = 95.5 bits (236), Expect = 1e-20, Method: Compositional matrix adjust. Identities = 70/243 (28%), Positives = 118/243 (48%), Gaps = 28/243 (11%) Query: 2 RMTTCSVRPGALVSMSALVLALLIPTAAS---AVPSFSEVQRDFLPSEASLLDRNGELLQ 58 R T +R A+ A + L+ A + VP+ LPS +L D ++ Sbjct: 17 RPTNIKLRQAAIAGFIASIFVALLGVAYTLLFIVPN--------LPSIDALTDYKPKIPL 68 Query: 59 RIRI-------NMDERRLSWVKLEDVSPALRHALIASEDRRFYQHSGIDWSAVAASAWGN 111 R+ E R +V + ++ ++++A+IA ED FY+H G+D V + N Sbjct: 69 RVYTADNVLIGEFGEERRDFVSVANIPASMKNAIIAIEDNNFYEHGGVDVLGVVRAGLAN 128 Query: 112 LWNTKTRGASTITMQLAGLIYDNLRRKSGARSLTQKVSQAWIAQSLERSWRKDQILEAYL 171 L ++++GASTITMQ+A L RK ++ ++K+ + +A +E++ KDQILE Y+ Sbjct: 129 LVRSRSQGASTITMQVARTFL--LTRK---KTYSRKLQEVILAYRIEKNLTKDQILELYM 183 Query: 172 NLVAFRGELVGVHALSRVMFRKHPSGLDQGEAAIAVALIRAPNA-----TPRRVAERACA 226 N + G + +R+ F K L E+A+ + +AP + P+R ER Sbjct: 184 NQIYLGERAYGFGSAARIYFGKPIQDLTIAESAMLAGIPKAPASANPVVNPKRATERQQY 243 Query: 227 ILK 229 ILK Sbjct: 244 ILK 246 Score = 85.5 bits (210), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 109/368 (29%), Positives = 159/368 (43%), Gaps = 53/368 (14%) Query: 273 KLLSAPGQQVRSTLDAPLQRFAAQALRHQLAALADRNIEDGSII--VIDNTSG------- 323 +LLS G+ V T D RFAA L + A A + ++ GS+I V DN Sbjct: 384 QLLS--GETVEITGDG--LRFAASYLSDK--ATAQKKLQPGSVIRVVQDNKKKWGISQLP 437 Query: 324 EVLAWI----GSSGSLSA-------AANVDGVVAQ--RQAGSTLKPFLYELAIEKKWLTA 370 EV A G GS+ A A N V Q RQ GST+KPF+Y A+EK + + Sbjct: 438 EVAAAFVSVNGQDGSIRALVGGFDFALNQFDHVTQAWRQPGSTIKPFVYSAALEKGF-SP 496 Query: 371 ASLLDDSPV----NLATSAGLYIPQNYDKQYKGLVSLRTSLGSSLNIPAVRTLVMVTPER 426 +L++D+P+ + + P N + +Y G V++RT L S N+ ++R L +TP Sbjct: 497 GTLINDAPLAEDSESEQGSKAWNPGNDNGKYDGPVTMRTGLKRSKNLVSIRILRKITPAY 556 Query: 427 FFRRLQALGFNLRESGDYYGYSLALGSADVTLANLTNAYRVLANQGRYSP---LRTRLD- 482 L GF + +L LG+ VT + AY V AN G P ++ +D Sbjct: 557 AIEHLTHFGFEADKQPA--NLTLTLGTGSVTPLQMAGAYAVFANGGFKVPPYLIQKVVDA 614 Query: 483 ------QARTPA---RTTPVMDADAAFIIGDILSDRSARARTFGLENALSTRIWTAVKTG 533 +A+ P T +D AFI ++ D R+ T L + R A KTG Sbjct: 615 RGKVLLEAQHPQAGDETARAIDPRNAFITDSMMRD-VVRSGTGYLASQRLGRSDLAGKTG 673 Query: 534 TSKDMRDNWCVGYSSRYTVGVWVGNASGAPMWDVS-GVTGAAPVWQALMQYLHERGREGG 592 T+ + D W GY W+G + G T A P+W + Y+ R Sbjct: 674 TTDNAMDGWFAGYGRDIVAVAWMGYDKPRSLGSREFGGTLALPIW---IDYMRTALRGKP 730 Query: 593 RDVRNAPP 600 + APP Sbjct: 731 EMAKVAPP 738 >gi|152981042|ref|YP_001355059.1| penicillin-binding protein [Janthinobacterium sp. Marseille] Length = 762 Score = 85.9 bits (211), Expect = 8e-18, Method: Compositional matrix adjust. Identities = 50/169 (29%), Positives = 90/169 (53%), Gaps = 10/169 (5%) Query: 66 ERRLSWVKLEDVSPALRHALIASEDRRFYQHSGIDWSAVAASAWGNLWNTKTRGASTITM 125 E R + V ++++ ++ A++A ED RF++H G+D+ + +A NL +GASTIT Sbjct: 65 EERRNLVHIKEIPDIMKKAVLAIEDDRFFEHGGVDYVGIVRAAVHNLSGGARQGASTITQ 124 Query: 126 QLAGLIYDNLRRKSGARSLTQKVSQAWIAQSLERSWRKDQILEAYLNLVAFRGELVGVHA 185 Q+A + S ++L +K+ + +A +E++ KDQILE Y+N + G + Sbjct: 125 QVARNFF-----LSSEQTLKRKIYEVLLAWKIEKNLSKDQILEVYMNQIYLGQRAYGFSS 179 Query: 186 LSRVMFRKHPSGLDQGEAAIAVALIRAPNA-----TPRRVAERACAILK 229 +++ + K + EAA+ L +AP+A P+R R IL+ Sbjct: 180 AAQIYYGKKLQQITIAEAAMLAGLPKAPSAYNPVVNPKRAKARQQYILQ 228 Score = 83.6 bits (205), Expect = 4e-17, Method: Compositional matrix adjust. Identities = 71/254 (27%), Positives = 120/254 (47%), Gaps = 22/254 (8%) Query: 346 AQRQAGSTLKPFLYELAIEKKWLTAASLLDDSPVNL---ATSAGLYIPQNYDKQYKGLVS 402 A RQ GS+ KPF+Y ++EK L+ +++++D+P++ T + P+NYD +Y G ++ Sbjct: 454 AWRQPGSSFKPFIYSASLEKG-LSPSTIINDAPISFDAGQTGGQPWEPKNYDGKYDGPMT 512 Query: 403 LRTSLGSSLNIPAVRTLVMVTPERFFRRLQALGFNLRESGDYYGYSLALGSADVTLANLT 462 +R L S N+ ++R L + + + GF+ ++ Y +LALG+ VT + Sbjct: 513 MRKGLAKSKNMISIRILHKIGAKYGQEYITRFGFDADKNPPY--LTLALGAGAVTPLQMA 570 Query: 463 NAYRVLANQG-RYSP-LRTRLDQA--RTPARTTPVMDADA---------AFIIGDILSDR 509 AY V AN G + SP + +R+ A + + P M D AF++ +L + Sbjct: 571 AAYSVFANGGYKISPYMISRITDANGKLLSEVKPDMAGDEANRAIDPRNAFLMDSML--K 628 Query: 510 SARARTFGLENALSTRIWTAVKTGTSKDMRDNWCVGYSSRYTVGVWVGNASGAPMWD-VS 568 ++ R A KTGT+ D D W GY W+G + + + Sbjct: 629 GVVTSGTAIKAMALKRTDLAGKTGTTNDSFDAWFAGYQPNIVGIAWIGFDQPKNLGNRET 688 Query: 569 GVTGAAPVWQALMQ 582 G A P+W MQ Sbjct: 689 GGGLALPIWINYMQ 702 >gi|152982155|ref|YP_001354651.1| monofunctional biosynthetic peptidoglycan transglycosylase [Janthinobacterium sp. Marseille] Length = 231 Score = 63.2 bits (152), Expect = 6e-11, Method: Compositional matrix adjust. Identities = 42/116 (36%), Positives = 60/116 (51%), Gaps = 6/116 (5%) Query: 71 WVKLEDVSPALRHALIASEDRRFYQHSGIDWSAVAASAWGNLWNTK-TRGASTITMQLAG 129 W+ +S L+ A+IASED F +H G+DW A+ + N+ K G STIT QLA Sbjct: 64 WIPYNRISNNLKRAIIASEDSNFSEHEGVDWDALQKAYEKNIKKGKVVAGGSTITQQLAK 123 Query: 130 LIYDNLRRKSGARSLTQKVSQAWIAQSLERSWRKDQILEAYLNLVAFRGELVGVHA 185 ++ SG RS +K + I LE K++I E YLN+V + + G A Sbjct: 124 NLF-----LSGDRSYLRKGQEVIITYMLEYWMDKERIFEIYLNVVEWGVGIFGAEA 174 Database: BlastDatabases/707/707 Posted date: Apr 13, 2011 12:58 PM Number of letters in database: 1,221,021 Number of sequences in database: 3697 Lambda K H 0.318 0.132 0.386 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3697 Number of Hits to DB: 1,748,236 Number of extensions: 73500 Number of successful extensions: 233 Number of sequences better than 1.0e-08: 3 Number of HSP's gapped: 226 Number of HSP's successfully gapped: 5 Length of query: 762 Length of database: 1,221,021 Length adjustment: 91 Effective length of query: 671 Effective length of database: 884,594 Effective search space: 593562574 Effective search space used: 593562574 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 133 (55.8 bits)