BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.2907.p (243 letters) Database: BlastDatabases/707/707 3697 sequences; 1,221,021 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|152980365|ref|YP_001354235.1| ABC-type branched-chain amino a... 238 3e-64 gi|152979805|ref|YP_001352472.1| ABC-type branched-chain amino a... 237 5e-64 gi|152980280|ref|YP_001352350.1| ABC-type branched-chain amino a... 209 1e-55 gi|152980086|ref|YP_001353243.1| amino-acid ATP-binding ABC tran... 167 5e-43 gi|152980737|ref|YP_001353500.1| ABC-type branched-chain amino a... 147 4e-37 >gi|152980365|ref|YP_001354235.1| ABC-type branched-chain amino acid transport system ATP-binding protein [Janthinobacterium sp. Marseille] Length = 241 Score = 238 bits (606), Expect = 3e-64, Method: Compositional matrix adjust. Identities = 113/235 (48%), Positives = 168/235 (71%), Gaps = 2/235 (0%) Query: 10 ILQVEDLAVAYGHIEAVKGISLSLNEGEITALVGANGAGKSTSLLAISGLVKAQR--GRV 67 +L++ L VAYG IEAVKG+ L +++GE+ L+GANGAGK+T+L AI+G + R G + Sbjct: 5 VLKISGLKVAYGGIEAVKGVDLEVHKGELITLIGANGAGKTTTLKAITGTLPNCRVEGHI 64 Query: 68 LLNGQDLLQMSPHRIVESGVVQVAEGRATLTTLTVEENLALGAYTRKDKDGVARDLEWVY 127 GQ + + +V + V EGR T ++++ENL +GA+TR DKDG+A D++ + Sbjct: 65 EYAGQPIKGLHSFELVRKKLAMVPEGRGVFTRMSIQENLLMGAFTRDDKDGIAADIDKWF 124 Query: 128 SIFPRLKHRATGLAGNLSGGEQQMLAIGRALMAKPKVLLLDEPSMGLAPLIIQEIFRIVQ 187 +FPRLK RA +AG LSGGEQQMLA+ RALM+ P++LLLDEPSMGL+P+++++IF +++ Sbjct: 125 GVFPRLKERAAQMAGTLSGGEQQMLAMARALMSHPELLLLDEPSMGLSPIMVEKIFEVIR 184 Query: 188 EINKTGMTVLLVEQNVRQALRIAQRGYVLETGKIVLEDSGANLLGNPKVVEAYLG 242 ++ G+T+LLVEQN + AL+ A R YV+E+G + + +L +PKV EAYLG Sbjct: 185 TVSAQGITILLVEQNAKLALQAANRAYVMESGLVTMHGDAQQMLSDPKVREAYLG 239 >gi|152979805|ref|YP_001352472.1| ABC-type branched-chain amino acid transport system ATP-binding protein [Janthinobacterium sp. Marseille] Length = 249 Score = 237 bits (604), Expect = 5e-64, Method: Compositional matrix adjust. Identities = 114/234 (48%), Positives = 159/234 (67%) Query: 10 ILQVEDLAVAYGHIEAVKGISLSLNEGEITALVGANGAGKSTSLLAISGLVKAQRGRVLL 69 +L++E++ V YG + ISL ++EGEI L+GANGAGKST+L AI+GL G + + Sbjct: 16 MLKIEEITVRYGATTGINKISLEVHEGEIVTLIGANGAGKSTTLRAINGLEPLAHGSIRM 75 Query: 70 NGQDLLQMSPHRIVESGVVQVAEGRATLTTLTVEENLALGAYTRKDKDGVARDLEWVYSI 129 NG + SP +++ G+ EGR LTV EN+ +GAY RKDK V D+E ++ Sbjct: 76 NGHLVSGASPAEVIDHGISHCPEGRRVFPQLTVRENMEMGAYRRKDKAKVRDDMERMFDK 135 Query: 130 FPRLKHRATGLAGNLSGGEQQMLAIGRALMAKPKVLLLDEPSMGLAPLIIQEIFRIVQEI 189 FPRL+ R +AG LSGGEQQMLAI RALM++P++++ DEPS+GLAP I+++IF +++EI Sbjct: 136 FPRLRERVQQVAGTLSGGEQQMLAIARALMSRPRLVMFDEPSLGLAPNIVEQIFSLIREI 195 Query: 190 NKTGMTVLLVEQNVRQALRIAQRGYVLETGKIVLEDSGANLLGNPKVVEAYLGG 243 G TVL+VEQN AL + RGY+LE G IV + S A + NP++ AYLGG Sbjct: 196 RSEGTTVLIVEQNAYAALAMCDRGYLLENGHIVTQGSSAEMRANPEIRRAYLGG 249 >gi|152980280|ref|YP_001352350.1| ABC-type branched-chain amino acid transport system ATP-binding protein [Janthinobacterium sp. Marseille] Length = 235 Score = 209 bits (532), Expect = 1e-55, Method: Compositional matrix adjust. Identities = 106/232 (45%), Positives = 150/232 (64%) Query: 11 LQVEDLAVAYGHIEAVKGISLSLNEGEITALVGANGAGKSTSLLAISGLVKAQRGRVLLN 70 L V+ L Y + + +S+ + G+IT ++GANGAGKST + +I GL ++G +L Sbjct: 4 LIVKGLTTGYDKVNVLHDVSIEVAPGKITCILGANGAGKSTLIRSILGLTPPRQGEILWG 63 Query: 71 GQDLLQMSPHRIVESGVVQVAEGRATLTTLTVEENLALGAYTRKDKDGVARDLEWVYSIF 130 G++L H I+ SG+ + EGR +TV ENLALGA+ V L VY IF Sbjct: 64 GKNLAGEKTHNIIASGISCIPEGRKVFPRMTVAENLALGAFLESSSTVVRDRLARVYEIF 123 Query: 131 PRLKHRATGLAGNLSGGEQQMLAIGRALMAKPKVLLLDEPSMGLAPLIIQEIFRIVQEIN 190 PRLK RA LAG +SGGEQ M++IGR LMA+PK+L++DEPS+GL+PL ++E F+++++IN Sbjct: 124 PRLKERAAQLAGTMSGGEQAMVSIGRGLMAEPKLLVIDEPSLGLSPLYVKENFKVIKQIN 183 Query: 191 KTGMTVLLVEQNVRQALRIAQRGYVLETGKIVLEDSGANLLGNPKVVEAYLG 242 G+TVLLVEQN RQ L I+ GYVL G+++ + + L N V AY G Sbjct: 184 ALGITVLLVEQNARQTLAISHYGYVLSQGRVMAQGTAEALSSNDDVRSAYFG 235 >gi|152980086|ref|YP_001353243.1| amino-acid ATP-binding ABC transporter protein [Janthinobacterium sp. Marseille] Length = 231 Score = 167 bits (423), Expect = 5e-43, Method: Compositional matrix adjust. Identities = 93/233 (39%), Positives = 147/233 (63%), Gaps = 6/233 (2%) Query: 10 ILQVEDLAVAYGHIEAVKGISLSLNEGEITALVGANGAGKSTSLLAISGLVKAQRGRVLL 69 +L++++L YG + GI +++ GEI +L+G NGAG+ST++ A G+V A G + Sbjct: 4 LLEIKNLHAFYGKSHVLHGIDITIQSGEIVSLLGRNGAGRSTTVKAAMGMVAAT-GTIRF 62 Query: 70 NGQDLLQMSPHRIVESGVVQVAEGRATLTTLTVEENLALGAYTRKDKDGVARDLEWVYSI 129 G+++L + +RI G+ VAE R TL+V +NL LGA + A D+ Y + Sbjct: 63 KGKEILGLPTYRIARQGLGYVAESREIFPTLSVAQNLVLGAQAKSRWS--ADDM---YRL 117 Query: 130 FPRLKHRATGLAGNLSGGEQQMLAIGRALMAKPKVLLLDEPSMGLAPLIIQEIFRIVQEI 189 FPRL+ R AG LSGGEQQMLA+ R LM P+++++DEP+ GLAP ++ + +QE+ Sbjct: 118 FPRLQERQHVQAGVLSGGEQQMLALCRTLMGDPELIMIDEPTEGLAPQMVALVANFLQEL 177 Query: 190 NKTGMTVLLVEQNVRQALRIAQRGYVLETGKIVLEDSGANLLGNPKVVEAYLG 242 + G++VLL+EQ + AL+I+QR YV+ G++V E S +L + V + +LG Sbjct: 178 VQRGVSVLLIEQKLAIALKISQRVYVMGHGQVVFEGSPQDLQADAAVRQEWLG 230 >gi|152980737|ref|YP_001353500.1| ABC-type branched-chain amino acid transport system ATP-binding protein [Janthinobacterium sp. Marseille] Length = 232 Score = 147 bits (372), Expect = 4e-37, Method: Compositional matrix adjust. Identities = 86/214 (40%), Positives = 129/214 (60%), Gaps = 2/214 (0%) Query: 10 ILQVEDLAVAYGHIEAVKGISLSLNEGEITALVGANGAGKSTSLLAISGLVKAQRGRVLL 69 +LQV L YG ++GISLS+ +G+ +L+G NG GK+T L + G++ G V L Sbjct: 1 MLQVNQLNQYYGAAHTLRGISLSVEKGKCLSLLGRNGVGKTTLLKCLMGVLPVAAGNVSL 60 Query: 70 NGQDLLQMSPHRIVESGVVQVAEGRATLTTLTVEENLALGAYTRKDKDGVARDLEWVYSI 129 +G+D+ ++ PH+ G+ V +GR LTVEENL +G T+ K E VY + Sbjct: 61 DGRDITKLKPHQRAALGIAYVPQGREIFARLTVEENLLMGMATKSGKKASVIKGE-VYEL 119 Query: 130 FPRLKHRATGLAGNLSGGEQQMLAIGRALMAKPKVLLLDEPSMGLAPLIIQEIFRIVQEI 189 FP LK G+LSGG+QQ LAI RAL+A+PK+++LDEP+ G+ P II++I R++ + Sbjct: 120 FPVLKEMLHRRGGDLSGGQQQQLAIARALLAEPKLIILDEPTEGIQPSIIKDIGRVISLL 179 Query: 190 NKTG-MTVLLVEQNVRQALRIAQRGYVLETGKIV 222 + G + +LL EQ A +A VL G++V Sbjct: 180 RERGDIGILLCEQYFDFARELADTFVVLSRGEVV 213 Database: BlastDatabases/707/707 Posted date: Apr 13, 2011 12:58 PM Number of letters in database: 1,221,021 Number of sequences in database: 3697 Lambda K H 0.316 0.135 0.366 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3697 Number of Hits to DB: 545,197 Number of extensions: 21914 Number of successful extensions: 258 Number of sequences better than 1.0e-08: 58 Number of HSP's gapped: 185 Number of HSP's successfully gapped: 62 Length of query: 243 Length of database: 1,221,021 Length adjustment: 81 Effective length of query: 162 Effective length of database: 921,564 Effective search space: 149293368 Effective search space used: 149293368 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 128 (53.9 bits)