BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.2906.p (253 letters) Database: BlastDatabases/707/707 3697 sequences; 1,221,021 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|152980136|ref|YP_001354236.1| ABC-type branched-chain amino a... 267 4e-73 gi|152980619|ref|YP_001352471.1| ABC-type branched-chain amino a... 222 2e-59 gi|152979977|ref|YP_001353242.1| ABC-type branched-chain amino a... 179 1e-46 gi|152982550|ref|YP_001352349.1| ABC-type branched-chain amino a... 166 1e-42 gi|152981012|ref|YP_001355041.1| ABC-type transport system, ATPa... 157 5e-40 >gi|152980136|ref|YP_001354236.1| ABC-type branched-chain amino acid transport system ATP-binding protein [Janthinobacterium sp. Marseille] Length = 256 Score = 267 bits (683), Expect = 4e-73, Method: Compositional matrix adjust. Identities = 133/249 (53%), Positives = 171/249 (68%) Query: 1 MLLQLNDISKNFGGLQVLQGVNFNVKQGEIFGLIGPNGAGKTTVFNLITGLLRASSGSIR 60 ++L + +SK FGGLQ L VN + QG+I+GLIGPNGAGKTT FN+ITGL +A +GS Sbjct: 5 IILNIAGVSKRFGGLQALSDVNIKIMQGQIYGLIGPNGAGKTTFFNVITGLYQADTGSFE 64 Query: 61 FNDDDIGAVAPHKITERGIARTFQNIRVFKEMTLLENVVVGMHEHLNYGVASLLFNLGTF 120 APHK+ + GIARTFQNIR+F EMT LENV++G H + G+ +F+ Sbjct: 65 LAGKPYSPSAPHKVAKAGIARTFQNIRLFGEMTALENVMIGRHVRTHQGLFGAVFHHKAA 124 Query: 121 RRAEQQARERALELLSWVRLDHKAHMLADSLSYGEQRKLEFARALATKPKLLLLDEPVAG 180 RR E + R+RA+ELL +V + A A LSYG+QR+LE ARALAT P+LL LDEP AG Sbjct: 125 RREEAEIRQRAMELLEFVGIAKFAERTARHLSYGDQRRLEIARALATDPQLLALDEPAAG 184 Query: 181 MNPAEKTELMSEIVNIKQRGFTIFMIEHDMRFVMGLCERIAVLNFGKIIAEGTPDQIKNN 240 MN EK L +V IK G TI +IEHD++ +MGLC+RI VL++GK IAEG P ++ + Sbjct: 185 MNATEKLGLRELLVKIKAEGKTILLIEHDVKLMMGLCDRITVLDYGKPIAEGVPADVQKD 244 Query: 241 QEVIEAYLG 249 VIEAYLG Sbjct: 245 PAVIEAYLG 253 >gi|152980619|ref|YP_001352471.1| ABC-type branched-chain amino acid transport system ATP-binding protein [Janthinobacterium sp. Marseille] Length = 264 Score = 222 bits (565), Expect = 2e-59, Method: Compositional matrix adjust. Identities = 110/249 (44%), Positives = 159/249 (63%), Gaps = 2/249 (0%) Query: 3 LQLNDISKNFGGLQVLQGVNFNVKQGEIFGLIGPNGAGKTTVFNLITGLLRASSGSIRFN 62 L+L ++ GL + +F V G+I LIGPNGAGKTT +N+I+G ++ +SG ++ Sbjct: 10 LELQGVTMRIAGLTAVDNASFIVPAGKIVSLIGPNGAGKTTTYNVISGYMKPTSGRVKLF 69 Query: 63 DDDIGAVAPHKITERGIARTFQNIRVFKEMTLLENVVVGMHEHLNYGVASLLFNLGTFRR 122 DI +AP +I++ G+ R+FQ +F T+ EN++ +H GV L FRR Sbjct: 70 GHDITGMAPEQISQLGLVRSFQRTSIFSACTVAENILTALHLKGQCGVLQALLRTQKFRR 129 Query: 123 AEQQARERALELLSWVRLDHKAHMLADSLSYGEQRKLEFARALATKPKLLLLDEPVAGMN 182 E R +A +LL+++ L +A+ LA +LSYGEQR L ALA KPK+LLLDEP AG+N Sbjct: 130 EEADLRTQANDLLAFLGLSARANTLASNLSYGEQRLLGVGLALAAKPKVLLLDEPAAGLN 189 Query: 183 PAEKTELMSEIV-NIKQRGFTIFMIEHDMRFVMGLCERIAVLNFGKIIAEGTPDQIKNNQ 241 P+E TE E+V I Q G T+ ++EHDM VM + + I VLN+G++IA G+P +I+N+ Sbjct: 190 PSE-TEAFKEMVRRIGQSGVTVLLVEHDMHMVMSISDHIVVLNYGRLIATGSPSEIQNDP 248 Query: 242 EVIEAYLGK 250 EVI AYLG Sbjct: 249 EVIRAYLGS 257 >gi|152979977|ref|YP_001353242.1| ABC-type branched-chain amino acid transport system ATP-binding protein [Janthinobacterium sp. Marseille] Length = 251 Score = 179 bits (455), Expect = 1e-46, Method: Compositional matrix adjust. Identities = 98/252 (38%), Positives = 148/252 (58%), Gaps = 6/252 (2%) Query: 1 MLLQLNDISKNFGGLQVLQGVNFNVKQGEIFGLIGPNGAGKTTVFNLITGLLRASSGSIR 60 + L+L ++ K FG +++ G + + QG+ LIGPNGAGK+T+FNLI+G SSG I Sbjct: 4 LALELREVRKRFGNAEIICGASLQLPQGQRLALIGPNGAGKSTLFNLISGRFPLSSGDIL 63 Query: 61 FNDDDIGAVAPHKITERGIARTFQNIRVFKEMTLLENVVVGMHEHLNYGVASLLFNLGTF 120 N I P++I RG++R+FQ +F +++ EN+ + L Y ++ Sbjct: 64 LNGSSIAGQKPYQINRRGLSRSFQITNIFHRLSVFENLRCAVLWSLGY-----RYSFWQR 118 Query: 121 RRAEQQARERALELLSWVRLDHKAHMLADSLSYGEQRKLEFARALATKPKLLLLDEPVAG 180 Q +RA +++ + L + ++ AD LSY EQR LE +A ++LLLDEP AG Sbjct: 119 LNGLQDVNQRAEQVMEEIGLHKRRNVEADLLSYAEQRALEIGITIAGGAQVLLLDEPTAG 178 Query: 181 MNPAEKTELMSEIVNIKQRGFTIFMIEHDMRFVMGLCERIAVLNFGKIIAEGTPDQIKNN 240 M+ +E ++ E++ G T+ M+EHDM V GL +RIAVL +G+IIA TPD I+NN Sbjct: 179 MSRSE-SDAAVELIRKISAGKTLLMVEHDMDVVFGLADRIAVLVYGEIIACDTPDNIRNN 237 Query: 241 QEVIEAYLGKEE 252 V +AYLG E Sbjct: 238 PLVQQAYLGTVE 249 >gi|152982550|ref|YP_001352349.1| ABC-type branched-chain amino acid transport systems, ATPase component [Janthinobacterium sp. Marseille] Length = 274 Score = 166 bits (420), Expect = 1e-42, Method: Compositional matrix adjust. Identities = 101/256 (39%), Positives = 156/256 (60%), Gaps = 6/256 (2%) Query: 2 LLQLNDISKNFGGLQVLQGVNFNVKQGEIFGLIGPNGAGKTTVFNLITGLLRASSGSIRF 61 L+ + D++ FGGL L +N + +GE+ GL+GPNG+GKTT FN++TGL +A+SGSI + Sbjct: 20 LVGVTDLTMRFGGLTALDQLNMQINEGEVLGLLGPNGSGKTTFFNVLTGLYKATSGSIIY 79 Query: 62 NDDDIGAVAPHKITERGIARTFQNIRVFKEMTLLENVVVGMHEHLNYGVASLLFNLGTFR 121 ++ P +I G+ARTFQ R+ +T+ +N+V+G ++H+N+G+ LF F Sbjct: 80 KGQEVIGQTPQEIYRSGVARTFQRSRLSLPLTVFDNIVIGDYQHMNHGLFFNLFQRKAF- 138 Query: 122 RAEQQARERALE-LLSWVRLDHKAHML--ADSLSYGEQRKLEFARALATKPKLLLLDEPV 178 RAE A +E LL+ A M + + ++R++E RAL ++P+LLLLDEP Sbjct: 139 RAEYDAYVGKVEALLNIFSPPLVARMFEPVGTFTMIDRRRIEVCRALLSQPRLLLLDEPS 198 Query: 179 AGMNPAEKTELMSEIVNIKQR--GFTIFMIEHDMRFVMGLCERIAVLNFGKIIAEGTPDQ 236 AGM E LM +I+ ++ + TI +IEH+M + + +R V N+GK IAEGT + Sbjct: 199 AGMTHDETEALMDDILQVRGKLENLTIVLIEHEMNVIERITDRCIVFNYGKKIAEGTYAE 258 Query: 237 IKNNQEVIEAYLGKEE 252 I + V AYLG+ E Sbjct: 259 ITADPNVQTAYLGEAE 274 >gi|152981012|ref|YP_001355041.1| ABC-type transport system, ATPase component [Janthinobacterium sp. Marseille] Length = 246 Score = 157 bits (397), Expect = 5e-40, Method: Compositional matrix adjust. Identities = 87/248 (35%), Positives = 144/248 (58%), Gaps = 10/248 (4%) Query: 3 LQLNDISKNFGGLQVLQGVNFNVKQGEIFGLIGPNGAGKTTVFNLITGLLRASSGSIRFN 62 L +N + K++G QV++ V V+ GE+ GL+GPNGAGKTT F +I GL+ + +G I + Sbjct: 5 LIVNGLQKSYGARQVVRDVALQVESGEVIGLLGPNGAGKTTSFYMIVGLVPSDAGRIELD 64 Query: 63 DDDIGAVAPHKITERGIARTFQNIRVFKEMTLLENVVVGMHEHLNYGVASLLFNLGTFRR 122 DI + HK + G++ Q VF+++++ +N+ + G A N Sbjct: 65 GVDISRLPIHKRAQLGLSYLPQEASVFRKLSVEDNIRAVLELQRVNGKA---LN------ 115 Query: 123 AEQQARERALELLSWVRLDHKAHMLADSLSYGEQRKLEFARALATKPKLLLLDEPVAGMN 182 Q +R LL+ ++++ A SLS GE+R++E ARALAT P+ +LLDEP AG++ Sbjct: 116 -SAQLEQRLDTLLADLQIEKLRENQAMSLSGGERRRVEIARALATNPRFVLLDEPFAGVD 174 Query: 183 PAEKTELMSEIVNIKQRGFTIFMIEHDMRFVMGLCERIAVLNFGKIIAEGTPDQIKNNQE 242 P E+ + +K+RG + + +H++R +G+C+R ++N G ++A G PD I N+ Sbjct: 175 PIAVIEIQRIVRFLKERGIGVLITDHNVRETLGICDRAYIINQGAVLASGRPDDIIANES 234 Query: 243 VIEAYLGK 250 V YLG+ Sbjct: 235 VRRVYLGE 242 Database: BlastDatabases/707/707 Posted date: Apr 13, 2011 12:58 PM Number of letters in database: 1,221,021 Number of sequences in database: 3697 Lambda K H 0.321 0.138 0.390 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3697 Number of Hits to DB: 537,736 Number of extensions: 21100 Number of successful extensions: 269 Number of sequences better than 1.0e-08: 56 Number of HSP's gapped: 199 Number of HSP's successfully gapped: 60 Length of query: 253 Length of database: 1,221,021 Length adjustment: 81 Effective length of query: 172 Effective length of database: 921,564 Effective search space: 158509008 Effective search space used: 158509008 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 128 (53.9 bits)