BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.2905.p (291 letters) Database: BlastDatabases/707/707 3697 sequences; 1,221,021 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|152980782|ref|YP_001354237.1| ABC-type branched-chain amino a... 145 3e-36 gi|152981502|ref|YP_001352470.1| ABC-type branched-chain amino a... 133 1e-32 gi|152981704|ref|YP_001352348.1| ABC-type branched-chain amino a... 129 3e-31 gi|152981369|ref|YP_001353498.1| ABC-type branched-chain amino a... 69 5e-13 gi|152980096|ref|YP_001353241.1| ABC-type branched-chain amino a... 64 1e-11 >gi|152980782|ref|YP_001354237.1| ABC-type branched-chain amino acid transport system, permease component [Janthinobacterium sp. Marseille] Length = 404 Score = 145 bits (366), Expect = 3e-36, Method: Compositional matrix adjust. Identities = 116/347 (33%), Positives = 170/347 (48%), Gaps = 83/347 (23%) Query: 26 MLALSIYVTLS-CGLLSLANAAFMGIGAY-TASLLTMQF---------DLP--------- 65 MLAL + V + GLL L AF IGAY TA L + QF P Sbjct: 51 MLALGLNVVVGFAGLLDLGYIAFYAIGAYLTALLASPQFAVVLESFVNQYPAIGETLLWV 110 Query: 66 FPIALAAGGV---------LPALVA----LVIGIPTLRLSGVYLAMATLGFGEVVRVIVL 112 F +A G+ L ALVA ++G PTL+L G YLA+ TLGFGE++R+ + Sbjct: 111 FGPEIAQNGIHLSLWAIVPLAALVAGFFGALLGAPTLKLRGDYLAIVTLGFGEIIRIFMN 170 Query: 113 NLD----ITGGPMGLNGVPPI---------------------------TEWWHIVLLLGV 141 NL+ IT GP G+N + PI ++ + L L + Sbjct: 171 NLNGPVNITNGPQGINMIDPIRIFGVSLNGEAGSRATVMIGDYAMPSVNAYYFLFLFLCI 230 Query: 142 TIYALA-RLRRSKIGRAFEAIKEDEVAARLMGVNVAGYKLLAFVIGAAIAGVAGGLNAHY 200 I ++ RL+ S++GRAF AI+EDE+AA+ MG+N KLLAF +GA+ G+AG + A + Sbjct: 231 AIIFISVRLQNSRLGRAFVAIREDEIAAKAMGINTRNVKLLAFAMGASFGGIAGAMFASF 290 Query: 201 TFTIGPNNYGFENAVDILTMAVFGGTSNLIGPMIGSTILSLLPEVLRHFKD--------- 251 + P ++ ++ +L M V GG ++ G ++G IL+ LPEVLRH + Sbjct: 291 QGFVSPESFSLTESIAVLAMVVLGGMGHIPGVVLGGIILAALPEVLRHVVEPLQQSLFGE 350 Query: 252 -------FRLAINGLILILVVLYLPKGIW-DPR-RIRALLGRNAEKK 289 R + GL ++L++LY P G+W P+ R + KK Sbjct: 351 VLIDAEVLRQLLYGLAMVLIMLYRPSGLWPSPKSEDRPTADNDTAKK 397 >gi|152981502|ref|YP_001352470.1| ABC-type branched-chain amino acid transport system, permease component [Janthinobacterium sp. Marseille] Length = 346 Score = 133 bits (335), Expect = 1e-32, Method: Compositional matrix adjust. Identities = 100/291 (34%), Positives = 160/291 (54%), Gaps = 34/291 (11%) Query: 16 TVIFSIGVNAMLALSIYVTLS-CGLLSLANAAFMGIGAYTASLLTMQFDL---------- 64 +V+ S+G+ + A+S+ + L G LSL + AF G+GAYT SLL++ FD+ Sbjct: 28 SVVASVGIFVIAAISLNLLLGYTGQLSLGHVAFFGLGAYTTSLLSLGFDVTLWGMTEPLV 87 Query: 65 ----PFPIALAAGGVLPALVALVIGIPTLRLSGVYLAMATLGFGEVVRVIVLN-LDITGG 119 P ++ A G A+ ++G R+ G Y + T+ F +V+R++ LN +D+T G Sbjct: 88 VTAKPVWVSFACGIAFAAIAGWLLGKLAFRVRGAYFVIVTISFAQVMRMVSLNWVDLTEG 147 Query: 120 PMGLNGVPPITEW---------------WHIVLLLGVTIYAL-ARLRRSKIGRAFEAIKE 163 PM LN +P +T W + +VL + V Y L A + S+IGRA A++E Sbjct: 148 PMALNNIPALTMWVPGEGVIDLASKLSTYWLVLAVAVVSYLLVAAIVHSRIGRAMIALRE 207 Query: 164 DEVAARLMGVNVAGYKLLAFVIGAAIAGVAGGLNAHYTFTIGPNNYGFENAVDILTMAVF 223 +E AR +G+ V Y +A + A IAG AGGL AH I P+ + F + ++ M + Sbjct: 208 NETLARSVGIRVTHYLGIATIFAAGIAGAAGGLYAHTVRIIDPDVFMFMFTIMMVIMVIV 267 Query: 224 GGTSNLIGPMIGSTILSLLPEVLRHF--KDFRLAINGLILILVVLYLPKGI 272 GG L GP++G + LLPEVLR + + I G+++I V++++PKG+ Sbjct: 268 GGKGTLAGPVVGGLLFGLLPEVLRGVVSPEIQWMIYGVLMIAVLVFMPKGV 318 >gi|152981704|ref|YP_001352348.1| ABC-type branched-chain amino acid transport system, permease component [Janthinobacterium sp. Marseille] Length = 387 Score = 129 bits (323), Expect = 3e-31, Method: Compositional matrix adjust. Identities = 85/278 (30%), Positives = 150/278 (53%), Gaps = 27/278 (9%) Query: 33 VTLSCGLLSLAN---AAFMGIGAYTASLLTMQFDLPFPIALAAGGVLPALVALVIGIPTL 89 +TL G + +AN AAF GIG+YT ++L LP +A GV+ A++ V+ +P L Sbjct: 110 LTLQFGFVGVANFAGAAFFGIGSYTTAVLATHTGLPQLANIAISGVVAAIIGSVLILPVL 169 Query: 90 RLSGVYLAMATLGFGEVVRVIVLNLDITGGPMGLNGVPPITEWWHIV------------- 136 R G Y A+ T+ FG + + + D+ GGP GL VP + + H Sbjct: 170 RTRGHYAALVTIAFGILFKTFIEVNDVLGGPQGLQ-VPGMQLFGHAFNEGFTLFGIEFSF 228 Query: 137 ----LLLGVTIYA-----LARLRRSKIGRAFEAIKEDEVAARLMGVNVAGYKLLAFVIGA 187 +LL + I A + L RS +G + + ++ DE AA G+++A +K++AF +G Sbjct: 229 YVSYVLLSLVICAGAFVLVKALERSWVGLSMDVVRTDETAAATFGLHIARWKVIAFTMGN 288 Query: 188 AIAGVAGGLNAHYTFTIGPNNYGFENAVDILTMAVFGGTSNLIGPMIGSTILSLLPEVLR 247 AG+AG + I PNN+ F +++ ++++A+ GG N +G + + I+ +LPE L+ Sbjct: 289 LFAGIAGSVYGMMVGFIAPNNFTFSDSLLLVSIAILGGLGNPVGLIPAAIIVLMLPEKLQ 348 Query: 248 HFKDFRLAINGLILILVVLYLPKGIWDPRRIRALLGRN 285 +++R+ + ++I ++L+ P+G+ PR+ R R Sbjct: 349 FIQEYRVLLYAALVIAILLFRPEGLL-PRKTRLFFSRK 385 >gi|152981369|ref|YP_001353498.1| ABC-type branched-chain amino acid transport system, permease component [Janthinobacterium sp. Marseille] Length = 365 Score = 68.6 bits (166), Expect = 5e-13, Method: Compositional matrix adjust. Identities = 39/122 (31%), Positives = 64/122 (52%), Gaps = 1/122 (0%) Query: 152 SKIGRAFEAIKEDEVAARLMGVNVAGYKLLAFVIGAAIAGVAGGLNAHYTFTIGPNNYGF 211 SK+GR + +++ E +G N +KL + + A + G+AG L I P+ Sbjct: 230 SKLGRVLQGVRDSESRLMFIGYNPLWFKLFVWTLSAVVCGIAGALYVPQVGIINPSEMSP 289 Query: 212 ENAVDILTMAVFGGTSNLIGPMIGS-TILSLLPEVLRHFKDFRLAINGLILILVVLYLPK 270 N+++++ A GG +L+GP+IG+ T+ L F D L GLI I V L++P+ Sbjct: 290 ANSIEMVIWAAVGGRGSLLGPIIGAFTVNGLKSWFTAAFPDLWLYALGLIFIFVTLFMPQ 349 Query: 271 GI 272 GI Sbjct: 350 GI 351 >gi|152980096|ref|YP_001353241.1| ABC-type branched-chain amino acid transport system permease component [Janthinobacterium sp. Marseille] Length = 424 Score = 63.5 bits (153), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 69/275 (25%), Positives = 117/275 (42%), Gaps = 26/275 (9%) Query: 17 VIFSIGVNAMLALSIYVTLSCGLLSLANAAFMGIGAYTASL---LTMQFDLPFPIALA-- 71 +IF++ N +L G+LS +A + G+GA+ A L +L PI L Sbjct: 45 IIFALSYNMLLG-------QGGMLSFGHAVYSGLGAFCAIHAINLVAAGNLHIPITLIPL 97 Query: 72 AGGVLPALVALVIGIPTLRLSGVYLAMATLGFGEVVRVIVL--------------NLDIT 117 GGV + G T R SG AM TLG E+V L + + Sbjct: 98 VGGVAGLFFGALFGYVTTRKSGTTFAMITLGIVELVFACSLMFPGFFGGEGGIFTDRVVG 157 Query: 118 GGPMGLNGVPPITEWWHIVLLLGVTIYALARLRRSKIGRAFEAIKEDEVAARLMGVNVAG 177 G+ P I ++ I L ++ A+ ++ +GR A++++ A +G + Sbjct: 158 EAFFGITYGPQIQVYYLIAGWLLLSTVAMYAFTQTPLGRIINAVRDNPERAEFVGYDPQW 217 Query: 178 YKLLAFVIGAAIAGVAGGLNAHYTFTIGPNNYGFENAVDILTMAVFGGTSNLIGPMIGST 237 + L ++ A AG++G L A + N + IL GGT+ GP++G+ Sbjct: 218 VRYLTLMLSAFFAGISGALTAINFEIVSAENVSALRSGMILLFTFIGGTAFFFGPILGAI 277 Query: 238 ILSLLPEVLRHFKDFRLAINGLILILVVLYLPKGI 272 + L VL ++ + G+ +L+V+ P GI Sbjct: 278 VGVFLTVVLSNYTNAWQLYLGVFFVLIVMLAPGGI 312 Database: BlastDatabases/707/707 Posted date: Apr 13, 2011 12:58 PM Number of letters in database: 1,221,021 Number of sequences in database: 3697 Lambda K H 0.327 0.144 0.437 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3697 Number of Hits to DB: 591,993 Number of extensions: 22097 Number of successful extensions: 132 Number of sequences better than 1.0e-08: 9 Number of HSP's gapped: 119 Number of HSP's successfully gapped: 10 Length of query: 291 Length of database: 1,221,021 Length adjustment: 82 Effective length of query: 209 Effective length of database: 917,867 Effective search space: 191834203 Effective search space used: 191834203 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.7 bits) S2: 129 (54.3 bits)