BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.2904.p (293 letters) Database: BlastDatabases/707/707 3697 sequences; 1,221,021 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|152980329|ref|YP_001354238.1| branched chain amino acid ABC t... 160 6e-41 gi|152980464|ref|YP_001352469.1| branched-chain amino acid trans... 146 1e-36 gi|152981508|ref|YP_001352347.1| branched chain amino acid ABC t... 132 2e-32 gi|152981606|ref|YP_001351788.1| branched chain amino acid ABC t... 96 2e-21 gi|152980081|ref|YP_001353240.1| branched chain amino acid ABC t... 81 9e-17 >gi|152980329|ref|YP_001354238.1| branched chain amino acid ABC transporter permease [Janthinobacterium sp. Marseille] Length = 309 Score = 160 bits (406), Expect = 6e-41, Method: Compositional matrix adjust. Identities = 108/305 (35%), Positives = 185/305 (60%), Gaps = 16/305 (5%) Query: 4 QQLINALSLGSVYALFALGFTLVFGVLGVINLSHGAIFMLGSYAALLLVEQM-----ALP 58 QQ+IN L LGS+YAL ALG+T+V+GVL +IN +HG + M+G+ A L +++ + LP Sbjct: 6 QQIINGLVLGSMYALVALGYTMVYGVLNLINFAHGDVLMIGAMAGLTILKMLNTVAPDLP 65 Query: 59 LWVALLLAMVATGLLGLIIDVLVLK--PLRKRNAPHLIPMIATIGVAIMITNISQGIFGA 116 V L++A++ + + ++VL+ + R RNAP L P+I IGV+I++ ++ I+G Sbjct: 66 GIVKLIIAILGAIPVCVAVNVLIERVAYRRLRNAPRLAPLITAIGVSILLQTLAMMIWGR 125 Query: 117 ENKRFPQGTIPEESVSLGNLHITAVQVAIIVIAFVLMVVLLGVMRKTQLGRALRAIAESP 176 FPQ +P E + + I+ QV ++++A V M +L+ ++ KT++GRA+RA +E+P Sbjct: 126 SPIPFPQ-EMPTEPLHIMGALISPTQVMLLILAAVAMGLLVLLIEKTRMGRAMRATSENP 184 Query: 177 KAAYLLGINVEGLFLLTSFAAAALGGAAGVLVGVSFNAISPFMGQPMLHKGIAVIILGGM 236 + A L+G++ + ++T A L AGV+ ++++ MG K + +LGG+ Sbjct: 185 RVAGLMGVDSNRVIVMTFAIGAILAAIAGVMWAANYSSAQFAMGFVPGLKAFSAAVLGGI 244 Query: 237 GDIRGAMIGGLFLGFAEVLTVAYI--------SSDFRDAVAFGLLFLILLVKPSGMFGKV 288 G+I GAM+GG+ LG E L YI S ++D AF +L ++L ++PSG+ G+ Sbjct: 245 GNIYGAMLGGILLGLIESLGAGYIGDLTGGFLGSHYQDIFAFVVLIIVLTLRPSGIMGER 304 Query: 289 LERKA 293 + +A Sbjct: 305 VPDRA 309 >gi|152980464|ref|YP_001352469.1| branched-chain amino acid transport system permease protein [Janthinobacterium sp. Marseille] Length = 290 Score = 146 bits (369), Expect = 1e-36, Method: Compositional matrix adjust. Identities = 93/291 (31%), Positives = 165/291 (56%), Gaps = 7/291 (2%) Query: 2 LEQQLINALSLGSVYALFALGFTLVFGVLGVINLSHGAIFMLGSYAALLLVEQMALPLWV 61 L Q +NAL LGS YAL +G TL+FG++ V+N +HG ++ LG+Y A +V + + Sbjct: 4 LLQHTLNALVLGSTYALLGIGLTLIFGIMRVVNFAHGELYALGAYVAYGVVAMFGMNFFG 63 Query: 62 ALLLAMVATGLLGLIIDVLVLKPLRKRNAPHLIP-MIATIGVAIMITNISQGIFGAENKR 120 +L++A + L G I+ + LR+R+ + M+ IGV I++ N ++G K Sbjct: 64 SLIVAAIVGFLFGTAIEYFL---LRRRDLKAIDEVMLIMIGVMIIMQNAELLMWGGVAKS 120 Query: 121 FPQGTIPEESVSLGNLHITAVQVAIIVIAFVLMVVLLGVMRKTQLGRALRAIAESPKAAY 180 P +E + G + ++ +++ ++V A L+V+ ++ +++LG A+RA + AA Sbjct: 121 VPS-PFSQEPIVWGAISVSPIRLFVLVTALALLVIFYLLIERSRLGLAMRATFQDKDAAK 179 Query: 181 LLGINVEGLFLLTSFAAAALGGAAGVLVGVSFNAISPFMGQPMLHKGIAVIILGGMGDIR 240 ++G+NV ++ LT + L AG L+ F ++P MG K A++ILGG+G++ Sbjct: 180 IVGVNVSHVYTLTFALGSCLASVAGALLAPVF-VVTPTMGDLASLKAFAIVILGGLGNLP 238 Query: 241 GAMIGGLFLGFAEVLTVAYISSDFRDAVAFGLLFLILLVKPSGMFGKVLER 291 GA +GG L E YIS+ +RDA+ F ++ +++ +P G+F + ER Sbjct: 239 GAALGGFILAIVEEFGAGYISTAYRDALGFLVILAVMIFRPQGLF-TIRER 288 >gi|152981508|ref|YP_001352347.1| branched chain amino acid ABC transporter permease [Janthinobacterium sp. Marseille] Length = 309 Score = 132 bits (333), Expect = 2e-32, Method: Compositional matrix adjust. Identities = 104/307 (33%), Positives = 171/307 (55%), Gaps = 23/307 (7%) Query: 4 QQLINALSLGSVYALFALGFTLVFGVLGVINLSHGAIFMLGSYAAL-----LLVEQMALP 58 Q + N L LG +YA+ A+GFTL FGVL VI SHG M+G++A L +L+ ++ P Sbjct: 6 QYVFNGLMLGMIYAMVAVGFTLFFGVLDVIKFSHGDTLMVGAFAGLTASTGVLMLDISSP 65 Query: 59 LWVALLL----AMVATGLLGLIIDVLVLKPLRKRNAPHLIPMIATIGVAIMITNISQGIF 114 W+ LL A+ TGLLG I ++ PL K AP L ++AT+ + ++ + + Sbjct: 66 -WIRLLAVVLSAVCVTGLLGAAIAKFLILPLHK--APPLNTLLATLMLGTVMRESVRLFY 122 Query: 115 --GAENKRFPQGTIPEESVSLGNLHITAVQVAIIVIAFVLMVVLLGVMRKTQLGRALRAI 172 G+ +K FP +P SV +G L + A V +++ ++ + ++ +T+LG A+RA+ Sbjct: 123 PDGSNSKPFPS-LLPTGSVDIGTLALRADNVILLISGLAIIAGVHFLITRTRLGMAIRAV 181 Query: 173 AESPKAAYLLGINVEGLFLLTSFAAAALGGAAGVLVGVSFNAISPFMGQPMLHKGIAVII 232 A+ + A L+GIN E + LLT + + AGV+ G+ +N I+ +G + G + I Sbjct: 182 AQDGETARLMGINFEAVVLLTFALGSGMAALAGVMNGLYYNEINFNVGLLLGVIGFSAAI 241 Query: 233 LGGMGDIRGAMIGGLFLGFAEVLTVA-------YISSDFRDAVAFGLLFLILLVKPSGMF 285 LGG+G+I GA++GG +VL A I S ++D AF ++ +++ KP+G+ Sbjct: 242 LGGLGNIYGAILGGFLFAALQVLGSALLPALIPNIPSAYKDVFAFAVVIILMAWKPTGLI 301 Query: 286 G-KVLER 291 K ER Sbjct: 302 AEKSSER 308 >gi|152981606|ref|YP_001351788.1| branched chain amino acid ABC transporter permease [Janthinobacterium sp. Marseille] Length = 293 Score = 96.3 bits (238), Expect = 2e-21, Method: Compositional matrix adjust. Identities = 77/276 (27%), Positives = 146/276 (52%), Gaps = 11/276 (3%) Query: 18 LFALGFTLVFGVLGVINLSHGAIFMLGSYAALLLVE---QMALPLWV---ALLLAMVATG 71 L A G L+FGV +INL+ G+I+ LG+Y + + LP+ + LL A + G Sbjct: 20 LVASGLQLIFGVQRIINLACGSIYALGAYFGIFVTSWALSKGLPVHLFPFVLLGAGIVIG 79 Query: 72 LLGLIIDVLVLKPLRKRNAPHLIPMIATIGVAIMITNISQGIFGAENKRFPQGTIPEESV 131 L+G+ ++ L+ N P ++ T V +M ++ + +GA+ ++ P ++ ++ Sbjct: 80 LIGIPLERLIRT---IYNRPESFQLLLTFAVMLMFQDVLRFFWGADPQQLPNVSMTFGTM 136 Query: 132 SLGNLHITAVQVAIIVIAFVLMVVLLGVMRKTQLGRALRAIAESPKAAYLLGINVEGLFL 191 S + + V +I +A L + + + KT+ G+ LRA AE+ + + +GINV +++ Sbjct: 137 SAFGVSMPTYNVMVIAVAVTLAIGMAYFLGKTKTGKILRATAENRETSAAMGINVTRVYV 196 Query: 192 LTSFAAAALGGAAGVLVGVSFNAISPFMGQPMLHKGIAVIILGGMGDIRGAMIGGLFLGF 251 + LG G LV + A S MG ++ + AV+++GG+G ++GA +G L +G Sbjct: 197 MVFTLGTMLGTIGGALV-IPNAAASLEMGVELVVEAFAVVVIGGLGSMKGAAVGALIVGL 255 Query: 252 AEVLTVAYISSDFRDAVAFGLLFLILLVKPSGMFGK 287 L+ Y A+ + ++ +L+ KP+G++GK Sbjct: 256 IRALSAMYYPEAEILAI-YAIVLAVLIWKPAGLYGK 290 >gi|152980081|ref|YP_001353240.1| branched chain amino acid ABC transporter permease [Janthinobacterium sp. Marseille] Length = 315 Score = 80.9 bits (198), Expect = 9e-17, Method: Compositional matrix adjust. Identities = 63/212 (29%), Positives = 113/212 (53%), Gaps = 11/212 (5%) Query: 5 QLINALSLGSVYALFALGFTLVFGVLGVINLSHGAIFMLGSYAALLLVEQMALPLWVALL 64 L+N LS G + + + G TL+F ++GV+N +H + +M+G+Y A + A+ W AL+ Sbjct: 7 SLLNGLSYGLLLFMLSSGLTLIFSMMGVLNFAHASFYMIGAYFAYSISN--AIGFWPALV 64 Query: 65 LAMVATGLLGLIIDVLVLKPLRKRNAPHLIP-MIATIGVAIMITNISQGIFGAENKRFPQ 123 LA +A GLLG +++ L+ + K IP ++ T G++ +I + Q I+G P Sbjct: 65 LAPLAVGLLGALVERFGLRAVHKYGK---IPELLFTFGLSYVIVELVQLIWG--RVAVPY 119 Query: 124 GTIPEESVSLGNLHITAVQVA---IIVIAFVLMVVLLGVMRKTQLGRALRAIAESPKAAY 180 PE SL L+ T + ++++A +++ + + +T++G ++A P+ Sbjct: 120 SIPPELQGSLFTLYTTTFPIYRGFMMLVAILMLAAIYFTLTRTRIGLVIQAALTHPQMVE 179 Query: 181 LLGINVEGLFLLTSFAAAALGGAAGVLVGVSF 212 LG NV +F+ AL G AGV+ G +F Sbjct: 180 ALGHNVPRVFMWVFAGGCALAGLAGVIGGNAF 211 Database: BlastDatabases/707/707 Posted date: Apr 13, 2011 12:58 PM Number of letters in database: 1,221,021 Number of sequences in database: 3697 Lambda K H 0.329 0.145 0.407 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3697 Number of Hits to DB: 553,380 Number of extensions: 19100 Number of successful extensions: 163 Number of sequences better than 1.0e-08: 10 Number of HSP's gapped: 146 Number of HSP's successfully gapped: 10 Length of query: 293 Length of database: 1,221,021 Length adjustment: 82 Effective length of query: 211 Effective length of database: 917,867 Effective search space: 193669937 Effective search space used: 193669937 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.8 bits) S2: 129 (54.3 bits)