BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.2903.p (385 letters) Database: BlastDatabases/707/707 3697 sequences; 1,221,021 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|152981426|ref|YP_001352468.1| ABC-type branched-chain amino a... 115 4e-27 gi|152981352|ref|YP_001354956.1| ABC-type branched-chain amino a... 96 5e-21 gi|152981674|ref|YP_001351789.1| ABC-type branched-chain amino a... 94 2e-20 gi|152981349|ref|YP_001352355.1| ABC-type branched-chain amino a... 80 2e-16 gi|152981482|ref|YP_001352346.1| ABC-type branched-chain amino a... 60 2e-10 >gi|152981426|ref|YP_001352468.1| ABC-type branched-chain amino acid transport systems, periplasmic component [Janthinobacterium sp. Marseille] Length = 385 Score = 115 bits (288), Expect = 4e-27, Method: Compositional matrix adjust. Identities = 114/375 (30%), Positives = 169/375 (45%), Gaps = 22/375 (5%) Query: 3 FNTMLKTIPALLIGAAL---SQAALAADIKLGVAEALTGPAAKYGVAIKNGFTLASEEIN 59 N +K A IG A+ + A IK+GV E LTGP A G + NG +A++ +N Sbjct: 1 MNWHIKKSLAACIGLAMFAATSAYAQETIKIGVTEPLTGPVAAAGTYVTNGARIAADYVN 60 Query: 60 AKGGVNGDKLALVIEDEQGKKEEAINVFKKLIFQDKVLAVFGPTLSNSAFAADPIANASK 119 GGV G K+ LVIED + EA+N +KLI +DKV + G S A P + Sbjct: 61 QNGGVLGKKIQLVIEDNKSNPREAVNSVEKLILKDKVPVLMGAWSSTFTLAIMPKLIEYE 120 Query: 120 VVVFGTSNTADGITAMG-PFTFR---NSVMEADVLPVTVKAAVKHFGIKKVAVIYGNDDA 175 V + + ++ IT G P+ FR S MEA + + IKK + N+D Sbjct: 121 VPLVVEAASSSKITTAGNPWVFRTSPTSAMEAQAFSKVIDG--YNPAIKKADFLVVNNDW 178 Query: 176 FTKSGYDVFKATLEQQKIPVTTTEAYAKGDVDFKAQLTKIKAGNPDAIVCSCLAEEAANI 235 + + FK LE + I + TE D AQL +K D + + E+ Sbjct: 179 GLGAAVE-FKKMLEAKGIAIGRTETMTPDMTDLSAQLAALKGSGSDTVFVTSGIEQLTLA 237 Query: 236 ILQTRALGMKQPFIGGNGLNSPKLFEIAKDAG---DNTLMGSPWSAEN-QTPA-NKAFIA 290 I Q + Q I G L + G + L +PW+ E + PA KAF+ Sbjct: 238 IRQAGEQRLPQRIITTGGAFPEPLLKTPGPKGYVSQHLLFFAPWAPERAKHPAVAKAFMD 297 Query: 291 AYKAKFGSDPDQFAA-QAYDAMYIVADALKTVKLSGNLAKDRDALRAALPAVKIDGATGK 349 +K++ Q + +DA+ +A+A +KL+G + A+R AL V++ G G Sbjct: 298 GWKSRGLELAGQVEGFRGFDAILTIAEA---IKLAGK--AEPAAIRDALWKVQVKGTNGD 352 Query: 350 FAFRPAPAVAGKQVG 364 AF VAGK+ G Sbjct: 353 IAFSKV-GVAGKESG 366 >gi|152981352|ref|YP_001354956.1| ABC-type branched-chain amino acid transport systems, periplasmic component [Janthinobacterium sp. Marseille] Length = 376 Score = 95.5 bits (236), Expect = 5e-21, Method: Compositional matrix adjust. Identities = 96/321 (29%), Positives = 151/321 (47%), Gaps = 18/321 (5%) Query: 11 PALLIGAA-LSQAALAADIKLGVAEALTGPAAKYGVAIKNGFTLASEEINAKGGVNGDK- 68 P L+ A+ L QA +K+G+A LTGP A YG +NG LA +E+N K V G K Sbjct: 9 PILIASASTLVQAQEVQTVKIGLAAPLTGPQAFYGKDSQNGARLAVDELNEKKIVVGGKQ 68 Query: 69 --LALVIEDEQGKKEEAINVFKKLIFQD-KVLAVFGPTLSNSAFAADPIANASKVVVFGT 125 L+ ED+ ++ V ++ F D V AV G T S +A A I + + Sbjct: 69 LRFELLSEDDAADPKQGAAVAQR--FCDLHVNAVIGHTNSGTAIPAARIYHQCGLPNLSP 126 Query: 126 SNTADGITAMG-PFTFRNSVMEADVLPVTVKAAVKHFGIKKVAVIYGNDDAFTKSGYDVF 184 S T+ +T TFR ++ + V +K +AV+ + A+ + D F Sbjct: 127 SATSPELTKSAYNTTFRMLANDSTLAQALAAYTVNVLKLKTIAVV-DDRSAYGQGLADAF 185 Query: 185 KATLEQQKIPVTTTEAYAKGDVDFKAQLTKIKAGNPDAIVCSCLAEEAANIILQTRALGM 244 + L + V T + VDF A LT IK NPDA+ + + + ++ Q LG+ Sbjct: 186 RTALRNTPVQVVTQQYTNDKAVDFSAILTAIKGRNPDAVFFGGMDPQGSAMLRQMEQLGL 245 Query: 245 -KQPFIGGNGLNSPKLFEIAK--DAGDNTLMGSPWSAENQTPANKAFIAAYKAKFGSDPD 301 +Q FIGG+G+ + + + + DN + A ++T A++A+ Y KF P Sbjct: 246 TRQKFIGGDGICTQGMEQRTEGMKIQDNLVCAHSGIALDRTTASRAWKKRYDEKF---PG 302 Query: 302 QFAAQ---AYDAMYIVADALK 319 QF +YDA+ VA A++ Sbjct: 303 QFQMHGPYSYDAVLAVAKAMQ 323 >gi|152981674|ref|YP_001351789.1| ABC-type branched-chain amino acid transport systems, periplasmic component [Janthinobacterium sp. Marseille] Length = 431 Score = 93.6 bits (231), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 97/371 (26%), Positives = 167/371 (45%), Gaps = 25/371 (6%) Query: 1 MQFNTMLKTIPALLIGAALSQAALAAD--IKLGVAEALTGPAAKYGVAIKNGFTLASEEI 58 +Q T+LK + L A A + +++G+ G A G G + I Sbjct: 13 IQRRTVLKAAGVGVATGLLGMPAFAQNKPLRVGIIAPRGGVAGTIGECGLRGVEWTTARI 72 Query: 59 NAKGGVNGDKLALVIEDEQGKKEEAINVFKKLIFQDKVLAVFGPTLSNSAFAADPIANAS 118 NA GG+ G K+ LVI++E K + I+ F+KL+ Q+KV V G S + A P A S Sbjct: 73 NAAGGIGGRKVELVIQEETSPK-DTIDRFRKLVLQEKVDCVQGIVSSGVSLALAPAAEDS 131 Query: 119 KV-VVFGTSNTADGITAMGP---FTFRNSVMEADVLPVTVKAAVKHF--GIKKVAVIYGN 172 ++ +F T DG+ P + FR++ E + + ++ A+KHF K++A + Sbjct: 132 RMPTIFWDGTTQDGVKETMPKPKYVFRSTDNECEAVMASL-LAIKHFKGKFKRIACV-NP 189 Query: 173 DDAFTKSGYDVFKATLEQQKIPV-TTTEAYAK-GDVDFKAQLTKIKAGNPDAIVCSCLAE 230 D ++ ++ + F+A L++ I +E ++K G++D + + +KA PD I S L Sbjct: 190 DYSYGRNTWTAFQALLKKYGIEHEVVSEQWSKIGNLDLTSNVAALKAAKPDLIFSSLLFA 249 Query: 231 EAANIILQTRALGMKQ------PFIGGNGLNSPKLFEIAKDA-GDNTL-MGSPWSAENQT 282 + + Q G+ + P G K F G NT+ P ++ Q Sbjct: 250 DLPVFMKQAHNAGLTEGTRFVLPAAGWQHTAMKKEFTPEGIVWGHNTMYFDDPKASATQ- 308 Query: 283 PANKAFIAAYKAKFGSDPDQFAAQAYDAMYIVADALKTVKLSGNLAKDRDALRAALPAVK 342 K F+ Y K+ P A +AY +M + ++ + + + AA+P V+ Sbjct: 309 ---KEFVKWYADKYKDYPHWEADRAYFSMMVYKAGVEKALAAKKSWPTPEEICAAIPGVQ 365 Query: 343 IDGATGKFAFR 353 I+ GK A R Sbjct: 366 IESLGGKGAMR 376 >gi|152981349|ref|YP_001352355.1| ABC-type branched-chain amino acid transport systems, periplasmic component [Janthinobacterium sp. Marseille] Length = 381 Score = 80.5 bits (197), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 118/363 (32%), Positives = 163/363 (44%), Gaps = 21/363 (5%) Query: 1 MQFNT-MLKTIPALLIGAALSQAALAADIKLGVAEALTGPAAKYGVAIKNGFTLASEEIN 59 MQF T M+ A+L+ A S A +K+G +TG A G +NG LA EE+N Sbjct: 1 MQFKTKMIPLTGAVLLALAGSTLAQEQIVKIGHVGPVTGTDAHMGKDNENGARLAVEELN 60 Query: 60 AKGGV-NGDKLAL--VIEDEQGKKEEAINVFKKLIFQDKVLAVFGPTLSNSAFAADPIAN 116 AKG V NG K+ L + ED+ ++A KL+ V V G S + A I Sbjct: 61 AKGVVINGKKVKLQYMPEDDAADPKQATAAATKLV-DSNVAVVIGHLNSGATIPASRIYA 119 Query: 117 ASKVVVFGTSNTADGITAMGPFT-FRNSVMEADVLPVTVKAAVKHFGIKKVAVIYGNDD- 174 + +V S+T+ T G T FR +A + V + AVK K VAVI DD Sbjct: 120 NAGIVQISPSSTSPKYTQQGFKTAFRVVANDAQLGRVLGQYAVKSLAAKNVAVI---DDR 176 Query: 175 -AFTKSGYDVFKATLEQQKIPVTTTEAYAKGDVDFKAQLTKIKAGNPDAIVCSCLAEEAA 233 A+ + + F ++ V ++ DF A LT IKA PD I + Sbjct: 177 TAYGQGVAEEFAKGVKAAGGTVVASQYTNNKATDFNAILTAIKAKKPDVIFFGGMDAVGG 236 Query: 234 NIILQTRALGMKQPFIGGNGLNSPKLFEIAKDAG---DNTLMGSPWSAENQTPAN-KAFI 289 ++ Q + LG+ F+GG+G+ + L +A AG +N E+ A F Sbjct: 237 PMLQQMKQLGINAKFMGGDGICTGSLPGLA-GAGLGENNVYCAEAGGVEDARKAGLDKFR 295 Query: 290 AAYKAKFGSDPDQFAAQAYDAMYIVADALKTVKLSGNLAKDRDALRAALPAVKIDGATGK 349 AAYK +FG D AA AYDA Y V DA++ K S AK L + G TG Sbjct: 296 AAYKKRFGIDVIYTAAYAYDATYAVVDAMQKAK-SWESAK----YLPELTKISYPGVTGT 350 Query: 350 FAF 352 AF Sbjct: 351 IAF 353 >gi|152981482|ref|YP_001352346.1| ABC-type branched-chain amino acid transport systems, periplasmic component [Janthinobacterium sp. Marseille] Length = 391 Score = 60.5 bits (145), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 92/369 (24%), Positives = 150/369 (40%), Gaps = 41/369 (11%) Query: 4 NTMLK--TIPALLIGAALSQAALAADI-KLGVAEALTGPAAKYGVAIKNGFTLASEEINA 60 NT+LK + A + + LS A A D+ K+ LTG + G+ +N LA NA Sbjct: 5 NTVLKAAVVCAAVGMSLLSMTASAKDVVKIAFVGPLTGGVSSIGLGGRNSADLAVRLRNA 64 Query: 61 KGGVNGDKLALVIEDEQGKKEEAINVFKKLIFQDKVLAVFGPTLSNSAFAADPIANASK- 119 LV +D++ + + V K+ ++A G T SA A + ++ Sbjct: 65 DPKAK-YTYQLVTQDDECRPNVGVQVATKIAADKSIVA--GVTHFCSAVAMGTVGVYNRF 121 Query: 120 ---VVVFGTSNTADGITAMGPFTFRNSVMEADVLPVTV----KAAVKHF---GIKKVAVI 169 V+V+G + T+ N E + T+ + A K G KK A+I Sbjct: 122 GLPVIVWGA--------VLPEITYGNDFKEVHRVNGTMINQSEVAAKFMISKGYKKWAII 173 Query: 170 YGNDDAFTKSGYDVFKATLEQQKIPVTTTEAYAKGDVDFKAQLTKIKAGNPDAIVCSCLA 229 + D + K F +++ V +T DF +LTKI+ PD + L Sbjct: 174 HDTTD-YGKGHNKYFSEFVKKNGGTVLSTFGVTADQQDFTTELTKIRELKPDVVYFGGLT 232 Query: 230 EEAANIILQTRALGMKQPFIGGNGLNSPKLFE-IAKDAGDNTLM---GSPWSAENQTPAN 285 I Q LG+K F G +G+ S + + + + +L G+PW + P Sbjct: 233 PLGVRIRTQMEKLGIKAQFEGTSGIKSDAYIQGVGEKVAEGSLSFIEGAPW---EKIPGG 289 Query: 286 KAFIAAYK-AKFGSDPDQFAAQAYDAMYIVADALKTVKLSGNLAKDRDALRAALPAVK-I 343 F A Y+ K+ P+ + A+ A ++ DA++ V DR +R L K + Sbjct: 290 LFFTAKYQLQKYSEPPEAYGPFAFAAANLIMDAVEKV------GPDRKKVRDVLNQTKDV 343 Query: 344 DGATGKFAF 352 D GK F Sbjct: 344 DTLIGKVTF 352 Database: BlastDatabases/707/707 Posted date: Apr 13, 2011 12:58 PM Number of letters in database: 1,221,021 Number of sequences in database: 3697 Lambda K H 0.316 0.132 0.368 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3697 Number of Hits to DB: 812,963 Number of extensions: 32159 Number of successful extensions: 126 Number of sequences better than 1.0e-08: 7 Number of HSP's gapped: 119 Number of HSP's successfully gapped: 7 Length of query: 385 Length of database: 1,221,021 Length adjustment: 85 Effective length of query: 300 Effective length of database: 906,776 Effective search space: 272032800 Effective search space used: 272032800 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 130 (54.7 bits)