BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.2901.p (274 letters) Database: BlastDatabases/707/707 3697 sequences; 1,221,021 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|152981680|ref|YP_001352254.1| signal transduction protein [Ja... 140 9e-35 gi|152981858|ref|YP_001353670.1| hypothetical protein mma_1980 [... 62 3e-11 gi|152982002|ref|YP_001354993.1| signal transduction protein [Ja... 58 7e-10 >gi|152981680|ref|YP_001352254.1| signal transduction protein [Janthinobacterium sp. Marseille] Length = 291 Score = 140 bits (353), Expect = 9e-35, Method: Compositional matrix adjust. Identities = 76/238 (31%), Positives = 124/238 (52%), Gaps = 2/238 (0%) Query: 1 MNLEALFQQQTALPSIPKVVQEVIESFNNESVSIEEIAKKLAADQVLSAKILRLANSSYY 60 ++ + Q LP++P +VQ+++++ + I I +K+A DQ LSAK L+ ANSS+Y Sbjct: 13 LHFNQVIAQIRDLPALPAIVQDLMKTIGPDETDINVITRKVAMDQALSAKTLQFANSSFY 72 Query: 61 HVSRTVGTVEDAVLMLGFMTVRTLVVSTGMAGSF--KKLPGVDLKLFWRYSLDTAIVAKW 118 + V T++ A+ ++G VR +V +T + G F G D WR+S+ TA+ A+ Sbjct: 73 GLQSKVTTIQQAITLIGVNAVRHVVTATALTGYFPQNNCAGFDFFALWRHSVATAVCARV 132 Query: 119 LAKQAKLNSDFAFTVGLMHAIGQLVMHAGMPEQALQVDKVAGPLDARRLDVERKSFGYDF 178 LA+ +N D+AFT GL+H IG+LV+ + V D L+ E++ G D Sbjct: 133 LARHLHVNQDYAFTAGLLHDIGRLVLVTYFRNEYEAVIAYRQEHDCHWLEAEQEVLGVDH 192 Query: 179 ADVGAELARRWRFPDEFGQVIKAFPQPLEGQFDPFAAIVHLAAWRARAQENQYSEDEM 236 G LA W F D I P + + A+IVH+A A A + + E+++ Sbjct: 193 VMAGEALAAHWNFSDTIRHAIAGHHNPEQQKVRSLASIVHIADAIAHALDLSHLENDL 250 >gi|152981858|ref|YP_001353670.1| hypothetical protein mma_1980 [Janthinobacterium sp. Marseille] Length = 294 Score = 62.4 bits (150), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 45/180 (25%), Positives = 86/180 (47%), Gaps = 6/180 (3%) Query: 13 LPSIPKVVQEVIESFNNESVSIEEIAKKLAADQVLSAKILRLANSSYYHVSRTVGTVEDA 72 +P P ++ V N E +++IA+ + D ++ +L +ANS+ +++ R + TVEDA Sbjct: 30 IPPRPALLIAVQHEMNKEEPHLKKIARVINRDVAIAGNLLSIANSAMFNLGRHIETVEDA 89 Query: 73 VLMLGFMTVRTLVVSTGM--AGSFKKLPGVDLKLFWRYSLDTAIVAKWLAKQAKLNS-DF 129 + ++G L+ S M A S K+ + FW S + ++A+ +++ + Sbjct: 90 ITLIGLNNCNALMTSLMMRRALSHGKMM---MPRFWDVSEKRSWGMMYVARLTHISTPEL 146 Query: 130 AFTVGLMHAIGQLVMHAGMPEQALQVDKVAGPLDARRLDVERKSFGYDFADVGAELARRW 189 A+ GL IG +M A P A ++ + +++E + + A VG LA W Sbjct: 147 AYNFGLFSDIGIPLMMASFPNYAQTLNAANKMEEGGFIELENQCHRINHAVVGGMLAEHW 206 >gi|152982002|ref|YP_001354993.1| signal transduction protein [Janthinobacterium sp. Marseille] Length = 454 Score = 57.8 bits (138), Expect = 7e-10, Method: Compositional matrix adjust. Identities = 40/175 (22%), Positives = 84/175 (48%), Gaps = 12/175 (6%) Query: 37 IAKKLAADQVLSAKILRLANSSYYHV-SRTVGTVEDAVLMLGFMTVRTLVVSTGMAG--S 93 + + + +D L+ ++LRLANS+ Y +++ TV AV++LG T+ L + + S Sbjct: 1 MTRTVLSDPTLTQRVLRLANSAMYSAFGQSINTVSKAVIVLGTETIGHLALGLKLIDGLS 60 Query: 94 FKKLPGVDLKLFWRYSLDTAIVAKWLAKQ-----AKLNSDFAFTVGLMHAIGQLVMHAGM 148 L D R ++ A++A +A+Q + +++ ++H++G+L++ + Sbjct: 61 AASLGSSDT----RSEMERAVMAGQIARQVASSTTRRDTEEVVVCSILHSLGRLMVSFYL 116 Query: 149 PEQALQVDKVAGPLDARRLDVERKSFGYDFADVGAELARRWRFPDEFGQVIKAFP 203 PEQ +V + A + + G + ++G + +RW P +K P Sbjct: 117 PEQWAEVQERATSNNISENEAAHDVLGLELDEIGRLIGKRWGLPSGLVASLKEMP 171 Database: BlastDatabases/707/707 Posted date: Apr 13, 2011 12:58 PM Number of letters in database: 1,221,021 Number of sequences in database: 3697 Lambda K H 0.320 0.134 0.386 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3697 Number of Hits to DB: 612,496 Number of extensions: 24393 Number of successful extensions: 81 Number of sequences better than 1.0e-08: 3 Number of HSP's gapped: 79 Number of HSP's successfully gapped: 3 Length of query: 274 Length of database: 1,221,021 Length adjustment: 82 Effective length of query: 192 Effective length of database: 917,867 Effective search space: 176230464 Effective search space used: 176230464 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 129 (54.3 bits)