BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.2898.p
         (318 letters)

Database: BlastDatabases/707/707 
           3697 sequences; 1,221,021 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|152980451|ref|YP_001352832.1| hydroxymethylbilane synthase [J...   431   e-122

>gi|152980451|ref|YP_001352832.1| hydroxymethylbilane synthase
           [Janthinobacterium sp. Marseille]
          Length = 317

 Score =  431 bits (1107), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 226/314 (71%), Positives = 261/314 (83%)

Query: 1   LKEFPPSNIVIVSRESRLAMWQAEYVRDRLAALYPQCSINILGTTTRGDQILDRALSKVG 60
           +K  PP  +VI SRESRLAMWQAE+VR++LA LYPQCSI ILG TTRGDQILDR LSKVG
Sbjct: 1   MKFPPPKKLVIASRESRLAMWQAEHVREKLAILYPQCSIEILGMTTRGDQILDRTLSKVG 60

Query: 61  GKGLFVKELEVAMAEGRADLAVHCLKDMPMDLPEGFELAAVLEREDPRDAFVSNDFAALD 120
           GKGLFVKELEVA+AE RADLAVH LKD+ M LP+GFELAAVLEREDPRDAFVSN+F  L+
Sbjct: 61  GKGLFVKELEVAIAEQRADLAVHSLKDVAMTLPDGFELAAVLEREDPRDAFVSNEFDTLE 120

Query: 121 ALPPGAIVGTSSLRRQAMIASRYPQLVVKPLRGNLDTRLAKLDRGDYAAIILAVAGLNRL 180
           ALP GAIVGTSSLRRQA+IA+RYPQLV++PLRGNLD RL KLD G+YAAIILA AGL RL
Sbjct: 121 ALPAGAIVGTSSLRRQALIAARYPQLVIRPLRGNLDRRLGKLDNGEYAAIILAAAGLKRL 180

Query: 181 GLKARIRSFLDPEQSLPSPGQGTLAIEIPAGRDDIKRLLAPLHDEPAAVVSAAERSVSRI 240
           GL ARIRS+L PEQSLP+PGQG +AIEI + R D+K  LAPL+    A+   AER+VSR 
Sbjct: 181 GLTARIRSYLPPEQSLPAPGQGAMAIEILSERADLKEWLAPLNHTETALAVTAERTVSRN 240

Query: 241 FGASCQIPLAAYATLQGQRLHLRAMIATPDGAQAAAAQAEGSADAPEALGAQVADLLKAR 300
           FG SCQIPLAA+AT+ G  + LRA+IATPDG++ A+A   G+A+APEALG Q+AD L+ +
Sbjct: 241 FGGSCQIPLAAFATIDGVNMRLRAIIATPDGSKMASADLSGAANAPEALGRQIADALQQQ 300

Query: 301 GADAILALCKAQAD 314
            A AILALCK  AD
Sbjct: 301 DAAAILALCKTDAD 314


  Database: BlastDatabases/707/707
    Posted date:  Apr 13, 2011 12:58 PM
  Number of letters in database: 1,221,021
  Number of sequences in database:  3697
  
Lambda     K      H
   0.319    0.134    0.378 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3697
Number of Hits to DB: 646,791
Number of extensions: 24965
Number of successful extensions: 85
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 85
Number of HSP's successfully gapped: 1
Length of query: 318
Length of database: 1,221,021
Length adjustment: 83
Effective length of query: 235
Effective length of database: 914,170
Effective search space: 214829950
Effective search space used: 214829950
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 129 (54.3 bits)