BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.2897.p
         (259 letters)

Database: BlastDatabases/707/707 
           3697 sequences; 1,221,021 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|152981768|ref|YP_001352833.1| uroporphyrinogen-III synthase [...   230   5e-62

>gi|152981768|ref|YP_001352833.1| uroporphyrinogen-III synthase
           [Janthinobacterium sp. Marseille]
          Length = 256

 Score =  230 bits (587), Expect = 5e-62,   Method: Compositional matrix adjust.
 Identities = 124/248 (50%), Positives = 160/248 (64%)

Query: 7   VVVTRPLQQAQAFAASVEQLGRRAVIFPLLTIGPVADDAELKATLAHLHEFALVVFVSPN 66
           VV+TRPL QA A A  V +LGR+AVIFPLL I P+ D   L+  L  L ++AL+ FVSPN
Sbjct: 5   VVITRPLAQADALAQRVTELGRKAVIFPLLEILPLDDQQSLRQALRELDQYALIAFVSPN 64

Query: 67  AIDAAFAHLSGWPSQVPIGIVGEGSRLALRAHGVDNSNATLYGPQRADKMDSEELLKSLP 126
           AIDAAF     WP Q+P+ +VGEGSR+AL  HG    N+T+  P   ++ DS+ LL  L 
Sbjct: 65  AIDAAFNARPDWPWQIPLAVVGEGSRMALLRHGATTGNSTIISPTDLERTDSQTLLAELD 124

Query: 127 MEQLRNKRALIVRGQTGRDFLSEALQQHGVTVEHLTAYRRLAPTLDARSGALLLDLLDGG 186
           +  LR K+ LI+RG+TGR+ L + L+  GV V  L AYRR+AP L+      L  LL   
Sbjct: 125 LPVLRGKQVLIIRGETGRELLGDTLRAAGVGVTPLAAYRRVAPELNNARRGELKRLLSCQ 184

Query: 187 ADWVITSSEALRNLLDLARLAGGEERVVKLQRQRIVVSHHRIAETARQQGFVQVILTGSG 246
            DW++TSSE LR L ++         V K+Q+QRI+VSH RIAETA+  GF  + LT SG
Sbjct: 185 NDWIVTSSEGLRFLTEMVAQLDEAGSVAKMQQQRIIVSHVRIAETAQLLGFSNITLTRSG 244

Query: 247 DERLLAAL 254
           D+ LLAAL
Sbjct: 245 DDGLLAAL 252


  Database: BlastDatabases/707/707
    Posted date:  Apr 13, 2011 12:58 PM
  Number of letters in database: 1,221,021
  Number of sequences in database:  3697
  
Lambda     K      H
   0.320    0.134    0.377 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3697
Number of Hits to DB: 481,256
Number of extensions: 17588
Number of successful extensions: 67
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 67
Number of HSP's successfully gapped: 1
Length of query: 259
Length of database: 1,221,021
Length adjustment: 81
Effective length of query: 178
Effective length of database: 921,564
Effective search space: 164038392
Effective search space used: 164038392
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 128 (53.9 bits)