BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.2895.p
         (399 letters)

Database: BlastDatabases/707/707 
           3697 sequences; 1,221,021 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|152980339|ref|YP_001352835.1| HemY protein [Janthinobacterium...   520   e-149

>gi|152980339|ref|YP_001352835.1| HemY protein [Janthinobacterium
           sp. Marseille]
          Length = 398

 Score =  520 bits (1339), Expect = e-149,   Method: Compositional matrix adjust.
 Identities = 260/398 (65%), Positives = 317/398 (79%)

Query: 1   MKILLWLLTLFASAIGLAVLARFNPGNVVLFYPPYRIDLSLNFFIFAALALFVAIYVVIR 60
           M+I LWLL LFA+AIGLAV+ARFN GNVV FYPPYR+DLSLNFFI  ++ LF  IY V++
Sbjct: 1   MRIFLWLLVLFATAIGLAVVARFNAGNVVFFYPPYRVDLSLNFFILLSVLLFFLIYAVLK 60

Query: 61  AIRLTQKLPGRVIAYRRAKRENESNKALRDALKAYFEGRFGQAEKSATRASDLPENAGIA 120
            +R+ QK+PG+V AYRR K+E + N+ALR++LKAYFEGRFG AEK+A RASD  +N+G+A
Sbjct: 61  TVRVAQKMPGKVAAYRRDKQERKGNQALRESLKAYFEGRFGHAEKAAMRASDSSDNSGLA 120

Query: 121 ALVAARAAHRMRQGDRRDIWLASTEVDPSLKAARLMTALELQVDEHHFKQALQTVEELNA 180
           AL+AARAAHRM+Q +RRD WLA+ E D SLK ARLMTA+EL VDE   + AL  V+ELNA
Sbjct: 121 ALIAARAAHRMQQTERRDTWLATVEEDQSLKTARLMTAIELLVDERQPELALDVVKELNA 180

Query: 181 NGTRHIQALQWALKANQQAKNWPEVLRLVQTLDKRNALHPALSNRLREMSYDALLSDRSH 240
           NGTRHI AL+ ALKANQ+A NWPEVLRLV+TLDK NALHPALS+RLRE++Y  LL + S+
Sbjct: 181 NGTRHIHALRMALKANQRANNWPEVLRLVRTLDKNNALHPALSSRLRELAYQDLLKNPSN 240

Query: 241 DAESIRLLWNGVPGADKLKPYIAVRAAQAFASRGLHDDARGLLERALAADWDIRLLRAYR 300
           DAES+R +W  +P  D++K Y+A+  A AF  RGLHDDAR ++E+++A +WD RLLR YR
Sbjct: 241 DAESLRNIWWAIPAEDRVKAYVAIHGANAFNQRGLHDDARAIIEKSMAVEWDERLLRPYR 300

Query: 301 DSTAEAGSPALLSQIEHCESWLAKNPTDAELALTLGMFCLRQKLWGKAQRHLEQALSDAI 360
            S A  GSPALL+QIE CE W   +PTD ELALTLG  CLRQ LWGKAQRHLEQALSDA 
Sbjct: 301 ASAAGEGSPALLAQIERCEEWGKTHPTDPELALTLGTLCLRQNLWGKAQRHLEQALSDAN 360

Query: 361 EPRTVRESHLALAQLHEALDQPEQAAGHYKQCALATAI 398
             R ++E HL LAQLHEAL    +AA HY+QCA+AT +
Sbjct: 361 GARMLQEVHLKLAQLHEALGHEAEAASHYRQCAVATIL 398


  Database: BlastDatabases/707/707
    Posted date:  Apr 13, 2011 12:58 PM
  Number of letters in database: 1,221,021
  Number of sequences in database:  3697
  
Lambda     K      H
   0.322    0.133    0.391 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3697
Number of Hits to DB: 831,819
Number of extensions: 30154
Number of successful extensions: 100
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 100
Number of HSP's successfully gapped: 1
Length of query: 399
Length of database: 1,221,021
Length adjustment: 85
Effective length of query: 314
Effective length of database: 906,776
Effective search space: 284727664
Effective search space used: 284727664
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 130 (54.7 bits)