BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.2893.p (561 letters) Database: BlastDatabases/707/707 3697 sequences; 1,221,021 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|152979791|ref|YP_001352764.1| peptide chain release factor 3 ... 1012 0.0 gi|152980195|ref|YP_001355104.1| EF-G elongation factor [Janthin... 152 4e-38 gi|152980795|ref|YP_001354182.1| GTP-binding elongation factor [... 98 1e-21 gi|152981046|ref|YP_001353057.1| GTP-binding protein LepA [Janth... 96 7e-21 gi|152981083|ref|YP_001355117.1| elongation factor Tu [Janthinob... 63 5e-11 >gi|152979791|ref|YP_001352764.1| peptide chain release factor 3 [Janthinobacterium sp. Marseille] Length = 556 Score = 1012 bits (2616), Expect = 0.0, Method: Compositional matrix adjust. Identities = 493/552 (89%), Positives = 513/552 (92%), Gaps = 1/552 (0%) Query: 9 PDLASAAADEATEAGASRKVSTDLIAREVKRRRTFGIISHPDAGKTTLTEKLLLFSGAIQ 68 P+L ++ + E TEA R VS+DLI EV RRRTFGIISHPDAGKTTLTEKLLLFSGAIQ Sbjct: 5 PELPTSDSAE-TEAFEPRTVSSDLINSEVARRRTFGIISHPDAGKTTLTEKLLLFSGAIQ 63 Query: 69 LAGTVKARKSGRHATSDWMEIEKQRGISVASSVMQFEYRDHVVNLLDTPGHQDFSEDTYR 128 LAGTVK RKSGRHATSDWM+IEKQRGISVASSVMQFEYRDHVVNLLDTPGHQDFSEDTYR Sbjct: 64 LAGTVKGRKSGRHATSDWMDIEKQRGISVASSVMQFEYRDHVVNLLDTPGHQDFSEDTYR 123 Query: 129 VLTAVDSALMVIDAAKGVEEQTIKLLNVCRMRNTPIITFMNKLDRETRDSLELLDELESV 188 VLTAVDSALMVIDAAKGVEEQTIKLLNVCRMRNTPIITFMNKLDRETRD LELLDELESV Sbjct: 124 VLTAVDSALMVIDAAKGVEEQTIKLLNVCRMRNTPIITFMNKLDRETRDPLELLDELESV 183 Query: 189 LKIQCAPVTWPIGMGKNFRGVYHLLRDEIMLFKAGEERANGSVEIIKGIDNPKLAEMFPL 248 LKI+CAPVTWPIGMGKNFRGVYHLLRDEIMLF AG E+A+ + E+IKGIDNP+LAEMFP Sbjct: 184 LKIECAPVTWPIGMGKNFRGVYHLLRDEIMLFAAGNEKADQTFEVIKGIDNPRLAEMFPQ 243 Query: 249 EIEQLKMEVELVHGASHPFNLDDFLAGIQTPVFFGSAINNFGVREILDALLDWAPGPGGR 308 EIEQLKMEVELVHGASHPF LD FL G +TPVFFGSAINNFGVREIL+ALLDWA P R Sbjct: 244 EIEQLKMEVELVHGASHPFELDAFLNGTRTPVFFGSAINNFGVREILNALLDWAQPPRER 303 Query: 309 DATVREVKPTEEPFSGFVFKIQANMDPAHRDRIAFLRVCSGRFERGMKLKHLRLNREIKV 368 DATVR VKPTE PFSGFVFKIQANMDPAHRDRIAFLRVCSGRFERGMK+KHLRLNREIKV Sbjct: 304 DATVRSVKPTELPFSGFVFKIQANMDPAHRDRIAFLRVCSGRFERGMKIKHLRLNREIKV 363 Query: 369 SSVVTFMASSREQVEEAYAGDIIGLPNHGNMQIGDSFSEGEMLQFTGIPYFAPDFFRVAR 428 SSVVTFMASSREQVEEAYAGDIIGLPNHGNMQIGDSFSEGE+LQFTGIPYFAPDFFR R Sbjct: 364 SSVVTFMASSREQVEEAYAGDIIGLPNHGNMQIGDSFSEGELLQFTGIPYFAPDFFRSVR 423 Query: 429 IRNPLKIKQLHKGLQQLGEEGAVQVFKPVTGSDLILGAVGVLQFEVVASRLLNEYGVDAV 488 IRNPLKIKQLHKGLQQLGEEGA+QVFKPV SDLILG VGVLQFEVVASRLLNEYGVDAV Sbjct: 424 IRNPLKIKQLHKGLQQLGEEGAIQVFKPVNSSDLILGGVGVLQFEVVASRLLNEYGVDAV 483 Query: 489 FEGTSISSARWISCDDKKKLADFEKSSAGANLAIDAAGNLAYLASSGVNLRLTQERWPEI 548 FEGTSISSARWI+CDDKK LA+FEKSSAG NLA DAAGNLAYLASSGVNLRLTQERWP + Sbjct: 484 FEGTSISSARWITCDDKKMLAEFEKSSAGHNLAHDAAGNLAYLASSGVNLRLTQERWPGV 543 Query: 549 TFHATREHAAKL 560 TFH TREHA KL Sbjct: 544 TFHETREHAVKL 555 >gi|152980195|ref|YP_001355104.1| EF-G elongation factor [Janthinobacterium sp. Marseille] Length = 702 Score = 152 bits (385), Expect = 4e-38, Method: Compositional matrix adjust. Identities = 123/481 (25%), Positives = 222/481 (46%), Gaps = 38/481 (7%) Query: 37 VKRRRTFGIISHPDAGKTTLTEKLLLFSGAIQLAGTVKARKSGRHATSDWMEIEKQRGIS 96 ++R R GI +H DAGKTT TE++L ++G G V AT DWME E++RGI+ Sbjct: 7 IERYRNIGISAHIDAGKTTTTERVLFYTGVNHKLGEV----HDGAATMDWMEQEQERGIT 62 Query: 97 VASSV-------MQFEYRDHVVNLLDTPGHQDFSEDTYRVLTAVDSALMVIDAAKGVEEQ 149 + S+ M + H +N++DTPGH DF+ + R + +D A MV A GV+ Q Sbjct: 63 ITSAATTCFWKGMAGNFPAHHINIIDTPGHVDFTIEVERSMRVLDGACMVYCAVGGVQPQ 122 Query: 150 TIKLLNVCRMRNTPIITFMNKLDRETRDSLELLDELESVLKIQCAPVTWPIGMGKNFRGV 209 + + P + F+NK+DR + ++ D++ + LK P+ PIG +F GV Sbjct: 123 SETVWRQANKYKVPRLAFVNKMDRTGANFFKVYDQMRARLKANPVPMQVPIGAEDSFEGV 182 Query: 210 YHLLRDEIMLF---KAGEERANGSVEIIKGIDNPKLAEMFPLEIEQLKMEVELVHGASHP 266 L++ + +++ G + G + D K E + E+ + Sbjct: 183 IDLVKMKAIIWDDASQGMKFEYGDIPEHLLADAKKWRENMVEAAAEASEELMNKYLEEGD 242 Query: 267 FNLDDFLAGIQ--------TPVFFGSAINNFGVREILDALLDWAPGP----------GGR 308 + D A I+ P+ G+A N GV+ +LD ++++ P P Sbjct: 243 LSEADIKAAIRQRTIASEIVPMMCGTAFKNKGVQAMLDGVVEYLPSPVDIPPVPGLNEDD 302 Query: 309 DATVREVKPTEEPFSGFVFKIQANMDPAHRDRIAFLRVCSGRFERGMKLKHLRLNREIKV 368 + VR+ + TE+ FS FKI DP ++ F+R SG G + + ++ ++ Sbjct: 303 EPVVRKAEDTEK-FSALAFKIAT--DP-FVGQLCFIRCYSGTLNSGDTVFNSVKEKKERI 358 Query: 369 SSVVTFMASSREQVEEAYAGDIIGLPNHGNMQIGDSFSEGE-MLQFTGIPYFAPDFFRVA 427 +V A+ RE+++E AGDI + + GD+ + + ++ + + P + Sbjct: 359 GRIVQMHANQREEIKEMLAGDIAAIVGLKDTTTGDTLCDDKAIVVLERMIFPEPVISQAV 418 Query: 428 RIRNPLKIKQLHKGLQQL-GEEGAVQVFKPVTGSDLILGAVGVLQFEVVASRLLNEYGVD 486 + +++ L +L E+ + +V I+ +G L +++ R+ E+GV+ Sbjct: 419 EPKTKADQEKMGLALNRLAAEDPSFRVRTDEESGQTIIAGMGELHLDIIVDRMKREFGVE 478 Query: 487 A 487 A Sbjct: 479 A 479 >gi|152980795|ref|YP_001354182.1| GTP-binding elongation factor [Janthinobacterium sp. Marseille] Length = 612 Score = 98.2 bits (243), Expect = 1e-21, Method: Compositional matrix adjust. Identities = 68/191 (35%), Positives = 98/191 (51%), Gaps = 16/191 (8%) Query: 41 RTFGIISHPDAGKTTLTEKLLLFSGAIQLAGTVKARKSGRHATSDWMEIEKQRGISVASS 100 R II+H D GKTTL ++LL SG + V AR D +IEK+RGI++ S Sbjct: 9 RNIAIIAHVDHGKTTLVDQLLRQSGTFRENQQVDAR------VMDSNDIEKERGITILSK 62 Query: 101 VMQFEYRDHVVNLLDTPGHQDFSEDTYRVLTAVDSALMVIDAAKGVEEQTIKLLNVCRMR 160 EY+ +N++DTPGH DF + RVL+ VDS L+++DA +G QT + Sbjct: 63 NCAVEYKGTHINIVDTPGHADFGGEVERVLSMVDSVLLLVDAQEGPMPQTRFVTRKALAL 122 Query: 161 NTPIITFMNKLDRETRD-------SLELLDELESVLKIQCAPVTWPIGMGKNFRGVYHLL 213 I +NK+DRE D + EL D+L + + P+ + G K + G+ + Sbjct: 123 GLKPIVVVNKIDRENADPQKAVNATFELFDKLGATDEQLDFPIVYASGF-KGYAGLEDTV 181 Query: 214 RDEIM--LFKA 222 RD M LF A Sbjct: 182 RDGNMEPLFDA 192 >gi|152981046|ref|YP_001353057.1| GTP-binding protein LepA [Janthinobacterium sp. Marseille] Length = 597 Score = 95.5 bits (236), Expect = 7e-21, Method: Compositional matrix adjust. Identities = 55/159 (34%), Positives = 92/159 (57%), Gaps = 12/159 (7%) Query: 41 RTFGIISHPDAGKTTLTEKLLLFSGAIQLAGTVKARKSGRHATSDWMEIEKQRGISVA-- 98 R F II+H D GK+TL +++ IQL G + R+ D M+IE++RGI++ Sbjct: 5 RNFSIIAHIDHGKSTLADRI------IQLCGGLSDREMEAQVL-DSMDIERERGITIKAQ 57 Query: 99 SSVMQFEYRD---HVVNLLDTPGHQDFSEDTYRVLTAVDSALMVIDAAKGVEEQTIKLLN 155 ++ + ++ RD + +NL+DTPGH DFS + R L+A + AL+V+DA++GVE QT+ Sbjct: 58 TAALMYKARDGQVYNLNLIDTPGHVDFSYEVSRSLSACEGALLVVDASQGVEAQTVANCY 117 Query: 156 VCRMRNTPIITFMNKLDRETRDSLELLDELESVLKIQCA 194 ++ +NK+D + D + E+E V+ I + Sbjct: 118 TALDLGVEVVPVLNKIDLPSADPANAIAEIEEVIGIDAS 156 >gi|152981083|ref|YP_001355117.1| elongation factor Tu [Janthinobacterium sp. Marseille] Length = 396 Score = 62.8 bits (151), Expect = 5e-11, Method: Compositional matrix adjust. Identities = 49/148 (33%), Positives = 71/148 (47%), Gaps = 17/148 (11%) Query: 44 GIISHPDAGKTTLTEKLLLFSGAIQLAGTVKARKSGRHATS----DWMEIEKQRGISVAS 99 G I H D GKTTLT + TV ++K G A D EK RGI++ + Sbjct: 16 GTIGHVDHGKTTLTAAI----------ATVLSKKFGGEAKGYDQIDNAPEEKARGITINT 65 Query: 100 SVMQFEYRDHVVNLLDTPGHQDFSEDTYRVLTAVDSALMVIDAAKGVEEQTIKLLNVCRM 159 S +++E +D PGH D+ ++ +D A++V AA G QT + + + R Sbjct: 66 SHVEYETESRHYAHVDCPGHADYVKNMITGAAQMDGAILVCSAADGPMPQTREHILLSRQ 125 Query: 160 RNTP-IITFMNKLDRETRDSLELLDELE 186 P II F+NK D D ELL+ +E Sbjct: 126 VGVPYIIVFLNKAD--MVDDAELLELVE 151 Database: BlastDatabases/707/707 Posted date: Apr 13, 2011 12:58 PM Number of letters in database: 1,221,021 Number of sequences in database: 3697 Lambda K H 0.319 0.135 0.389 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3697 Number of Hits to DB: 1,210,751 Number of extensions: 48184 Number of successful extensions: 149 Number of sequences better than 1.0e-08: 6 Number of HSP's gapped: 141 Number of HSP's successfully gapped: 7 Length of query: 561 Length of database: 1,221,021 Length adjustment: 88 Effective length of query: 473 Effective length of database: 895,685 Effective search space: 423659005 Effective search space used: 423659005 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 132 (55.5 bits)