BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.2892.p
         (498 letters)

Database: BlastDatabases/707/707 
           3697 sequences; 1,221,021 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|152982326|ref|YP_001354095.1| hypothetical protein mma_2405 [...   191   9e-50
gi|152982334|ref|YP_001353494.1| hypothetical protein mma_1804 [...   125   8e-30

>gi|152982326|ref|YP_001354095.1| hypothetical protein mma_2405
           [Janthinobacterium sp. Marseille]
          Length = 418

 Score =  191 bits (485), Expect = 9e-50,   Method: Compositional matrix adjust.
 Identities = 109/239 (45%), Positives = 148/239 (61%), Gaps = 18/239 (7%)

Query: 4   TSLAWAACLVFSLVSGMPAQAQSNDPVAPAVYTQQQLDQMLAPVALYPDSLLAQVLMAST 63
           ++LA   CL   LV+   AQA      AP+  T+++LDQ++APVALYPD+LL+QVLMA+T
Sbjct: 10  SALALVLCLQPVLVA---AQA------APSPLTKEELDQLVAPVALYPDTLLSQVLMAAT 60

Query: 64  YPLEVVQAQRFVEARPGLQGDGLARAVAPMPWDPSVKALVQFPSVLAMLNDRLDWMQQLG 123
           YP +V  A ++  A   ++GD   +AV    WDPSVKALV FP VL M+  + DW+Q+LG
Sbjct: 61  YPADVADAAKWSAAHTNVKGDDAVKAVDAQQWDPSVKALVGFPQVLQMMGQKPDWVQKLG 120

Query: 124 QAFLAQQPAVMDTVQNLRERARIAGTLESSPQQRVVVQED----VIEIVPVNPQVVYVPY 179
            AFLA    V+D+ Q LR RA+ AG L+S+ QQ+VVV       VI+I P NPQVVYVP 
Sbjct: 121 DAFLASSKDVLDSAQRLRARAQKAGNLKSNEQQKVVVDTSQPTQVIQIQPANPQVVYVPA 180

Query: 180 YNPTVVYGSWWWPSAPPLVWVPPPRYRPPSYSSGFSASISFSSGIGVMSAFFGDARPDW 238
           YNPTVVYG+W     P       P        +  ++ I+F  G+G+ ++ + D   DW
Sbjct: 181 YNPTVVYGTW---PYPSYPPYYMPPPPAYYPGAALASGIAFGIGVGITASLWSDC--DW 234


>gi|152982334|ref|YP_001353494.1| hypothetical protein mma_1804
           [Janthinobacterium sp. Marseille]
          Length = 483

 Score =  125 bits (313), Expect = 8e-30,   Method: Compositional matrix adjust.
 Identities = 92/251 (36%), Positives = 123/251 (49%), Gaps = 32/251 (12%)

Query: 1   VNKTSLAWAACLVFSLVSGMPAQAQSNDPVAPAVYTQQQLDQMLAPVALYPDSLLAQVLM 60
           + K++ + AA L F   + M   +  N    P+     Q+ QM+APVAL+PD LLAQVL 
Sbjct: 26  LGKSTESRAADLGFGSAAIMAQNSVGNAYRPPSA---DQIIQMVAPVALFPDKLLAQVLA 82

Query: 61  ASTYPLEVVQAQRFVEARPGLQGDGLARAVAPMPWDPSVKALVQFPSVLAMLNDRLDWMQ 120
           A  YP ++  A + ++  P LQ   L   V+   WD SVK+L  FP+VL+ L   + W  
Sbjct: 83  AGMYPEQITAADQLLKQNPSLQDAALDNVVSRQAWDVSVKSLTAFPAVLSQLAGNIRWSA 142

Query: 121 QLGQAFLAQQPAVMDTVQNLRERARIAGTLESSPQQRVVV----------QED------- 163
            LG  +      VM+ VQ LR RA  +G L+SS + RV             +D       
Sbjct: 143 ALGNTYANAPNDVMNAVQTLRLRALQSGKLKSSREIRVTAIPYQPPPPEYADDEAYYVVA 202

Query: 164 ----VIEIVPVNPQVVYVPYYNPTVVYGSWWWPSAPPLVWVPPPRYRPPSYSSGFSASIS 219
               +I I    P VVYVP YNP +VYG+       PL   P   YR P Y S   + IS
Sbjct: 203 PPSQIISIDSAQPDVVYVPEYNPALVYGA-------PLPVYPNYVYR-PGYGSIAGSIIS 254

Query: 220 FSSGIGVMSAF 230
           F+ GI V SA 
Sbjct: 255 FNIGIIVGSAL 265


  Database: BlastDatabases/707/707
    Posted date:  Apr 13, 2011 12:58 PM
  Number of letters in database: 1,221,021
  Number of sequences in database:  3697
  
Lambda     K      H
   0.317    0.128    0.388 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3697
Number of Hits to DB: 606,574
Number of extensions: 17293
Number of successful extensions: 69
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 70
Number of HSP's successfully gapped: 2
Length of query: 498
Length of database: 1,221,021
Length adjustment: 87
Effective length of query: 411
Effective length of database: 899,382
Effective search space: 369646002
Effective search space used: 369646002
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 131 (55.1 bits)