BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.2890.p (541 letters) Database: BlastDatabases/707/707 3697 sequences; 1,221,021 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|152980904|ref|YP_001351851.1| methyl-accepting chemotaxis tra... 392 e-110 gi|152980930|ref|YP_001351773.1| methyl-accepting chemotaxis pro... 390 e-110 gi|152981467|ref|YP_001352200.1| methyl-accepting chemotaxis pro... 382 e-107 gi|152981456|ref|YP_001355234.1| methyl-accepting chemotaxis pro... 380 e-106 gi|152980488|ref|YP_001354515.1| methyl-accepting chemotaxis pro... 379 e-106 >gi|152980904|ref|YP_001351851.1| methyl-accepting chemotaxis transducer transmembrane protein [Janthinobacterium sp. Marseille] Length = 568 Score = 392 bits (1008), Expect = e-110, Method: Compositional matrix adjust. Identities = 235/398 (59%), Positives = 302/398 (75%), Gaps = 7/398 (1%) Query: 115 RDAFADYEKSRQTVLALGAEGKTEQALQAVEQLVVPPGDKLINALAAHRRYNEQLGRQAA 174 R+A+ D RQTV L AEGK +A + + ++P + N++ A + ++L +A Sbjct: 122 RNAYRDI---RQTVFKLKAEGKLPEAQLLINEKMLPAMNAYSNSIDAVLQNEKKLIDEAG 178 Query: 175 QSAQDSLHSALYQAVLMSLVVCAI-VG-MVSVVISRTISSALGEAIQAARAIATGDLSTR 232 S Q + S +++L+ L+ A+ +G + ++ +I+ L A+ AR +A+GDLS + Sbjct: 179 TSIQSAFLSG--RSLLIGLLAAAVALGVFFAWRLAISITRPLNRAVTVARTVASGDLSAK 236 Query: 233 IRGRANDEVGQLMQAIQQMTDSLVRIVSNVRNSASTIDTASAEIAAGNLDLSSRTEAQAG 292 I +NDE GQLMQA++ MT SL + VS VR+ TI TAS +IA+GNLDLSSRTE QA Sbjct: 237 IEVSSNDETGQLMQALKDMTQSLNKTVSEVRSGTETIATASRQIASGNLDLSSRTEEQAS 296 Query: 293 SIEETASAMEQLTSTVRQNADNAQEANTLASSASSVATEGGHAVQQVVETMAAINASSLK 352 S+ ETA++M QLTSTVRQNADNA++AN+LA SAS VA +GG V +VV+TMA+IN S+ K Sbjct: 297 SLGETAASMGQLTSTVRQNADNARQANSLAMSASDVAVKGGSVVSEVVDTMASINESARK 356 Query: 353 IVDIISVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSAAAAKEIKEL 412 IVDIISVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVR+LAQRSAAAAKEIK L Sbjct: 357 IVDIISVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRNLAQRSAAAAKEIKIL 416 Query: 413 IDDSVSKVESGSRLVTQAGSTMQQVVESVRRVTDIVGDITAASAEQSDGIVQVNQAIGMM 472 I DSV KVE+GS+LV +AGSTM ++V+SV+RVTDI+ +I AAS EQS GI QVNQAIG M Sbjct: 417 IGDSVGKVEAGSKLVNEAGSTMNEIVDSVKRVTDIMAEIMAASQEQSSGIDQVNQAIGQM 476 Query: 473 DQATQQNAALVEQAAAASQSLREQAVNLAQAVGVFRLE 510 DQ TQQNAALVE+AAAA++SL++QA NLA+ V F+L+ Sbjct: 477 DQVTQQNAALVEEAAAAAESLQDQAGNLARVVSQFKLD 514 >gi|152980930|ref|YP_001351773.1| methyl-accepting chemotaxis protein [Janthinobacterium sp. Marseille] Length = 566 Score = 390 bits (1003), Expect = e-110, Method: Compositional matrix adjust. Identities = 228/399 (57%), Positives = 288/399 (72%), Gaps = 8/399 (2%) Query: 116 DAFADYEKSRQTVLALGAEGKTEQALQAVEQLVVPPGDKLINALAAHRRYNEQLGRQA-- 173 D + R+ V+ L EGK +A + + +P D N H +L R+ Sbjct: 121 DVRKSFLAGREGVMKLKTEGKEAEAAKYFDTTFLPAADSFKN----HFTEFVELERKQMD 176 Query: 174 AQSAQ--DSLHSALYQAVLMSLVVCAIVGMVSVVISRTISSALGEAIQAARAIATGDLST 231 A +AQ D ++ Q +L+S +V A + ++ I+ L A+ AAR +A GDL+ Sbjct: 177 AGTAQLSDVEAASTRQLMLLSAMVLAFGIFCAWRLTIGITRPLKTAVDAARRVAGGDLTN 236 Query: 232 RIRGRANDEVGQLMQAIQQMTDSLVRIVSNVRNSASTIDTASAEIAAGNLDLSSRTEAQA 291 I+ + DE GQL+ A++ M D L RIV VR TI TAS EIAAGNLDLSSRTE QA Sbjct: 237 DIKAESKDECGQLLAALKDMNDGLQRIVGEVRLGTETITTASNEIAAGNLDLSSRTEQQA 296 Query: 292 GSIEETASAMEQLTSTVRQNADNAQEANTLASSASSVATEGGHAVQQVVETMAAINASSL 351 S+EETAS+ME+LTSTV+QNADNA++AN LA SAS VA +GG V QVV+TM++IN SS Sbjct: 297 SSLEETASSMEELTSTVKQNADNARQANQLAVSASEVALKGGDVVSQVVQTMSSINESSR 356 Query: 352 KIVDIISVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSAAAAKEIKE 411 KIVDIISVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVA+EVRSLAQRSA+AAKEIK Sbjct: 357 KIVDIISVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVATEVRSLAQRSASAAKEIKA 416 Query: 412 LIDDSVSKVESGSRLVTQAGSTMQQVVESVRRVTDIVGDITAASAEQSDGIVQVNQAIGM 471 LI DSV KV++G++LV +AG+TM ++V S+RRVTDI+G+ITAAS EQS GI Q+NQAIG Sbjct: 417 LIGDSVGKVDTGNKLVAEAGATMDEIVNSIRRVTDIMGEITAASQEQSAGIEQINQAIGQ 476 Query: 472 MDQATQQNAALVEQAAAASQSLREQAVNLAQAVGVFRLE 510 MD TQQNA+LVE+AAAA++S+++QA L Q VG F+L+ Sbjct: 477 MDHVTQQNASLVEEAAAAAESMQDQARKLGQVVGAFKLD 515 >gi|152981467|ref|YP_001352200.1| methyl-accepting chemotaxis protein [Janthinobacterium sp. Marseille] Length = 542 Score = 382 bits (980), Expect = e-107, Method: Compositional matrix adjust. Identities = 248/516 (48%), Positives = 326/516 (63%), Gaps = 7/516 (1%) Query: 1 MTITNKLRLLLLAVVLGMASLTGMSIYQSNKIADAASYTSTNIVPSLLVLGDAGEAVFRI 60 M I KL L V + +T +S Q ++ ++ S + P ++ V +I Sbjct: 7 MKIRQKLTLSFGVVFALLVVITLLSNIQLGQLNNSIKLISKDRYPKTILANSVQIEVNKI 66 Query: 61 RVGIWRYAASTDAATRAKLEKSMSLESEKVLAAFERYQKENLTDATDTQLLQADRDAFAD 120 + + S+D A +L +K+ E+ + T+ D + + A A Sbjct: 67 ALNLRDIMLSSDPAKIKQLVSDTQASDKKMNEGLEQLRAVAQTE-EDNRYVSAAIVARDQ 125 Query: 121 YEKSRQTVLALGAEGKTEQALQAVEQLVVPPGDKLINALAAHRRYNEQLGRQAAQSAQ-D 179 Y +R T+L L +GKT +A ++Q+ +P K AL A Y L A +A Sbjct: 126 YVPARDTLLQLAQDGKTAEAKTYLDQVFMPVQVKYFIALDAMFDYQGSLMNVAGDAASAT 185 Query: 180 SLHSALYQAVL--MSLVVCAIVGMVSVVISRTISSALGEAIQAARAIATGDLSTRIRGRA 237 S+ + +L +SL++ VG ++R+I+ L A+ AR +A GDLS + + Sbjct: 186 SVQARTIINILAGISLLLSIAVGWW---VTRSITRPLNTAVGVARRVAQGDLSGPVFVKT 242 Query: 238 NDEVGQLMQAIQQMTDSLVRIVSNVRNSASTIDTASAEIAAGNLDLSSRTEAQAGSIEET 297 +EVGQLM A++ M D+L IV+ VRN TI AS EIA GN+DLSSRTE QA S+EET Sbjct: 243 TNEVGQLMAALKTMNDNLHHIVTQVRNGTGTIANASGEIARGNMDLSSRTEQQASSLEET 302 Query: 298 ASAMEQLTSTVRQNADNAQEANTLASSASSVATEGGHAVQQVVETMAAINASSLKIVDII 357 ASAME+LTSTVR+NADNAQ+AN LA+SA+ VA +GG V +V+ TMAAIN SS KI DI Sbjct: 303 ASAMEELTSTVRENADNAQQANQLAASATKVARQGGSVVHEVIATMAAINTSSKKIADIT 362 Query: 358 SVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSAAAAKEIKELIDDSV 417 VID IAFQTNILALNAAVEAARAGEQGRGFAVVASEVR+LAQRSA AA EIK LIDDSV Sbjct: 363 GVIDSIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRNLAQRSATAAMEIKALIDDSV 422 Query: 418 SKVESGSRLVTQAGSTMQQVVESVRRVTDIVGDITAASAEQSDGIVQVNQAIGMMDQATQ 477 +KV++GS+LV QAG T+ +VV SV ++ IV I+ AS EQS GI QV QAI +D+ TQ Sbjct: 423 AKVDNGSKLVQQAGLTIDEVVTSVGSLSGIVAAISNASQEQSAGIEQVGQAIVQIDEGTQ 482 Query: 478 QNAALVEQAAAASQSLREQAVNLAQAVGVFRLERQT 513 QNAALVEQ+AAA+QSLREQA L Q V +F+L+RQ+ Sbjct: 483 QNAALVEQSAAAAQSLREQADQLMQLVSIFKLDRQS 518 >gi|152981456|ref|YP_001355234.1| methyl-accepting chemotaxis protein [Janthinobacterium sp. Marseille] Length = 566 Score = 380 bits (976), Expect = e-106, Method: Compositional matrix adjust. Identities = 227/400 (56%), Positives = 290/400 (72%) Query: 111 LQADRDAFADYEKSRQTVLALGAEGKTEQALQAVEQLVVPPGDKLINALAAHRRYNEQLG 170 ++A DA + + +AL A+G +A + V P + + L + L Sbjct: 113 IKALTDARGRFTPVKDKFVALVAQGMRAEAQILLFAEVRPAQLEYMLGLDRLVEFQSNLM 172 Query: 171 RQAAQSAQDSLHSALYQAVLMSLVVCAIVGMVSVVISRTISSALGEAIQAARAIATGDLS 230 +A + A + +A ++S++ I + + +R+I+ L +A+ AR +A GDL+ Sbjct: 173 HKAGEDAHEVSANAQQLVGILSVIAVIISAFLGFLATRSITRPLSQAVGLARKVADGDLT 232 Query: 231 TRIRGRANDEVGQLMQAIQQMTDSLVRIVSNVRNSASTIDTASAEIAAGNLDLSSRTEAQ 290 I + DE GQL+QA+Q M + LVRIV+ VR TI TAS++IA GNLDLSSRTE Q Sbjct: 233 GTIVVTSKDETGQLLQALQDMNNGLVRIVTQVRMGTDTIATASSQIATGNLDLSSRTEEQ 292 Query: 291 AGSIEETASAMEQLTSTVRQNADNAQEANTLASSASSVATEGGHAVQQVVETMAAINASS 350 A S+EETAS+ME+LTSTV+QNADNA+++N LA +AS VA GG V QVVETM +IN S+ Sbjct: 293 ASSLEETASSMEELTSTVKQNADNARQSNQLALTASEVAVRGGAVVSQVVETMGSINDSA 352 Query: 351 LKIVDIISVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSAAAAKEIK 410 KIVDII VIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVR+LAQRSA+AAKEIK Sbjct: 353 NKIVDIIGVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRNLAQRSASAAKEIK 412 Query: 411 ELIDDSVSKVESGSRLVTQAGSTMQQVVESVRRVTDIVGDITAASAEQSDGIVQVNQAIG 470 LIDDSV KV +GSRLV AG+TM +VVESVRRVTDI+G+ITAAS EQ+DGI Q+NQA+ Sbjct: 413 TLIDDSVEKVNNGSRLVHDAGTTMAEVVESVRRVTDIMGEITAASQEQTDGIEQINQAVM 472 Query: 471 MMDQATQQNAALVEQAAAASQSLREQAVNLAQAVGVFRLE 510 MDQ TQQNAALVE+AAAA++SL++QA NL+Q V VF+L+ Sbjct: 473 QMDQVTQQNAALVEEAAAAAESLQDQANNLSQVVSVFKLD 512 >gi|152980488|ref|YP_001354515.1| methyl-accepting chemotaxis protein [Janthinobacterium sp. Marseille] Length = 567 Score = 379 bits (974), Expect = e-106, Method: Compositional matrix adjust. Identities = 263/539 (48%), Positives = 348/539 (64%), Gaps = 52/539 (9%) Query: 1 MTITN-----KLRLLLLAVVLGMASLTGMSIYQSNKIADAASYTSTNIVPSLLV----LG 51 M I+N +L L ++L MAS+ + +++ +A A + L LG Sbjct: 1 MKISNLKIGMRLGLAFAVILLLMASMIVVGVWRLQDVAQATVHMEEAAHKERLTHEWYLG 60 Query: 52 DAGEAVF---RIRVGIWRYAASTDAATRAKLEKSMSLESEKVLAAFERYQKE--NLTDAT 106 + A+ RIR S DA + + +K M L+S+++ + Q E L + Sbjct: 61 NVANAIRTAARIR--------SNDAEIQKQFQKEMELQSQEI----SKLQNEIVALIHSE 108 Query: 107 DTQLLQA----DRDAFADYEKSRQTVLALGAEGKTEQALQAVEQLVVPPGDKLINALAAH 162 + + L + R A+ D K + A A + VE + P A+AA Sbjct: 109 EGKKLMSVVGEKRTAYMDIRKDVFKLKAEANAAADLAATKLVETKMDP-------AMAA- 160 Query: 163 RRYNE---------QLGRQAAQSAQDSLHSALYQAVLMSLVVCAIV--GMVSVVISRTIS 211 YNE Q+ Q A++ D+L+++ + +L++L A++ ++ ++SR+I+ Sbjct: 161 --YNESVQAVVSFQQVIFQRAKADVDALYAS-GRTILITLGSIALILSAFLAWLLSRSIT 217 Query: 212 SALGEAIQAARAIATGDLSTRIRGRANDEVGQLMQAIQQMTDSLVRIVSNVRNSASTIDT 271 L A+ AR +A+GDL +I+ +NDE GQL++A++ M D LV+ VS VR TI T Sbjct: 218 RPLDYAVSVARTVASGDLRNKIQSSSNDETGQLLRALRDMNDGLVQSVSQVRTGIETIAT 277 Query: 272 ASAEIAAGNLDLSSRTEAQAGSIEETASAMEQLTSTVRQNADNAQEANTLASSASSVATE 331 AS +IAAGNLDLSSRTE QA S+EETAS+ME+LTSTV+QNADNA++AN LA SAS VA + Sbjct: 278 ASNQIAAGNLDLSSRTEEQASSLEETASSMEELTSTVKQNADNARQANQLAVSASGVAEK 337 Query: 332 GGHAVQQVVETMAAINASSLKIVDIISVIDGIAFQTNILALNAAVEAARAGEQGRGFAVV 391 GG V +VV+TM INAS+ KIVDII VIDGIAFQTNILALNAAVEAARAGEQGRGFAVV Sbjct: 338 GGEVVSRVVDTMEQINASAKKIVDIIGVIDGIAFQTNILALNAAVEAARAGEQGRGFAVV 397 Query: 392 ASEVRSLAQRSAAAAKEIKELIDDSVSKVESGSRLVTQAGSTMQQVVESVRRVTDIVGDI 451 ASEVR+LAQRSAAAAKEIK LI DSV KVE GS+LV +AG TM +VV+SV+ VTDI+ +I Sbjct: 398 ASEVRNLAQRSAAAAKEIKTLIGDSVDKVELGSKLVGEAGVTMDEVVQSVKHVTDIMSEI 457 Query: 452 TAASAEQSDGIVQVNQAIGMMDQATQQNAALVEQAAAASQSLREQAVNLAQAVGVFRLE 510 AAS EQS GI QVNQAIG MDQ TQQNAALVE+AAAA++SL EQA LA+AV VF+L+ Sbjct: 458 MAASQEQSAGIEQVNQAIGQMDQVTQQNAALVEEAAAAAESLNEQAAKLAEAVSVFKLD 516 Database: BlastDatabases/707/707 Posted date: Apr 13, 2011 12:58 PM Number of letters in database: 1,221,021 Number of sequences in database: 3697 Lambda K H 0.312 0.123 0.310 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3697 Number of Hits to DB: 897,876 Number of extensions: 29846 Number of successful extensions: 226 Number of sequences better than 1.0e-08: 21 Number of HSP's gapped: 174 Number of HSP's successfully gapped: 21 Length of query: 541 Length of database: 1,221,021 Length adjustment: 88 Effective length of query: 453 Effective length of database: 895,685 Effective search space: 405745305 Effective search space used: 405745305 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (21.9 bits) S2: 132 (55.5 bits)