BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.2889.p (539 letters) Database: BlastDatabases/707/707 3697 sequences; 1,221,021 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|152980904|ref|YP_001351851.1| methyl-accepting chemotaxis tra... 372 e-104 gi|152980930|ref|YP_001351773.1| methyl-accepting chemotaxis pro... 369 e-103 gi|152981467|ref|YP_001352200.1| methyl-accepting chemotaxis pro... 358 e-100 gi|152981410|ref|YP_001352004.1| methyl-accepting chemotaxis pro... 355 3e-99 gi|152980488|ref|YP_001354515.1| methyl-accepting chemotaxis pro... 351 8e-98 >gi|152980904|ref|YP_001351851.1| methyl-accepting chemotaxis transducer transmembrane protein [Janthinobacterium sp. Marseille] Length = 568 Score = 372 bits (954), Expect = e-104, Method: Compositional matrix adjust. Identities = 249/518 (48%), Positives = 328/518 (63%), Gaps = 19/518 (3%) Query: 1 MTIAKKLYLLISAVILSLCALTALSIYQSHRVSDAASYSTQNTVPSILTLDQAIESVYAI 60 + I+ +L + ++ + +T + I + V +A TQ +P A E + A+ Sbjct: 6 LKISTRLSFGFALLLTLMVMMTVVGILRLQEVGTSADVMTQTMLPKERL---AQEWLSAV 62 Query: 61 RLNVARYFIE-PTTREKIFPILEVLHEKTQAAFLKYEKE---CISDAKDEKLLEQDRVAF 116 +N AR TT + + +KT + +KE I +D++L E+ VA Sbjct: 63 DVNGARTLASAKTTSAEDQAFFQKQMDKTSVRANELQKEIESMIKTPEDKRLFEELVVAR 122 Query: 117 AAYEKARHQTLALVGTGQPSELQRAREELLVPAGNRLMKALTEHKQYNEQLGRQEMDNAA 176 AY R L G+ E Q E ++PA N ++ Q ++L +D A Sbjct: 123 NAYRDIRQTVFKLKAEGKLPEAQLLINEKMLPAMNAYSNSIDAVLQNEKKL----IDEAG 178 Query: 177 SILQSSIVITASVSLLIGALVAGASL---LLVRLIVS---SLRHATHVADAISRYDLTSK 230 + +QS+ + + SLLIG L A +L RL +S L A VA ++ DL++K Sbjct: 179 TSIQSAFL--SGRSLLIGLLAAAVALGVFFAWRLAISITRPLNRAVTVARTVASGDLSAK 236 Query: 231 IDHAAHDEIGHLIQALKRMNDSLCKIIGSVGDSTSTIQVAAGEIASGNLDLSSRTEAQAG 290 I+ +++DE G L+QALK M SL K + V T TI A+ +IASGNLDLSSRTE QA Sbjct: 237 IEVSSNDETGQLMQALKDMTQSLNKTVSEVRSGTETIATASRQIASGNLDLSSRTEEQAS 296 Query: 291 SLEETVTAMGQLTATVRQNADNAHQANELAASASAIASQAGDVVNEVVVTMDAIHASSLK 350 SL ET +MGQLT+TVRQNADNA QAN LA SAS +A + G VV+EVV TM +I+ S+ K Sbjct: 297 SLGETAASMGQLTSTVRQNADNARQANSLAMSASDVAVKGGSVVSEVVDTMASINESARK 356 Query: 351 IVGIISVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSAAAAREIKEL 410 IV IISVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVR+LAQRSAAAA+EIK L Sbjct: 357 IVDIISVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRNLAQRSAAAAKEIKIL 416 Query: 411 IDDSVHKVGTGSHLVAEAGNSMEKVVHSVRRVTDIVGEISSASSEQSAGIEQIHQAIGAM 470 I DSV KV GS LV EAG++M ++V SV+RVTDI+ EI +AS EQS+GI+Q++QAIG M Sbjct: 417 IGDSVGKVEAGSKLVNEAGSTMNEIVDSVKRVTDIMAEIMAASQEQSSGIDQVNQAIGQM 476 Query: 471 DDATQQNAALVEQAAAASQSLQEQAAHLVEAVGVFRLN 508 D TQQNAALVE+AAAA++SLQ+QA +L V F+L+ Sbjct: 477 DQVTQQNAALVEEAAAAAESLQDQAGNLARVVSQFKLD 514 >gi|152980930|ref|YP_001351773.1| methyl-accepting chemotaxis protein [Janthinobacterium sp. Marseille] Length = 566 Score = 369 bits (946), Expect = e-103, Method: Compositional matrix adjust. Identities = 220/397 (55%), Positives = 279/397 (70%), Gaps = 12/397 (3%) Query: 118 AYEKARHQTLALVGTGQPSELQRAREELLVPAGNRLMKALTEHKQYNEQLGRQEMDNAAS 177 ++ R + L G+ +E + + +PA + TE + L R++MD A Sbjct: 125 SFLAGREGVMKLKTEGKEAEAAKYFDTTFLPAADSFKNHFTEFVE----LERKQMD--AG 178 Query: 178 ILQSSIVITASVS--LLIGALVAGASLLLV-RLIVSSLRHATHVADAISRY---DLTSKI 231 Q S V AS +L+ A+V + RL + R DA R DLT+ I Sbjct: 179 TAQLSDVEAASTRQLMLLSAMVLAFGIFCAWRLTIGITRPLKTAVDAARRVAGGDLTNDI 238 Query: 232 DHAAHDEIGHLIQALKRMNDSLCKIIGSVGDSTSTIQVAAGEIASGNLDLSSRTEAQAGS 291 + DE G L+ ALK MND L +I+G V T TI A+ EIA+GNLDLSSRTE QA S Sbjct: 239 KAESKDECGQLLAALKDMNDGLQRIVGEVRLGTETITTASNEIAAGNLDLSSRTEQQASS 298 Query: 292 LEETVTAMGQLTATVRQNADNAHQANELAASASAIASQAGDVVNEVVVTMDAIHASSLKI 351 LEET ++M +LT+TV+QNADNA QAN+LA SAS +A + GDVV++VV TM +I+ SS KI Sbjct: 299 LEETASSMEELTSTVKQNADNARQANQLAVSASEVALKGGDVVSQVVQTMSSINESSRKI 358 Query: 352 VGIISVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSAAAAREIKELI 411 V IISVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVA+EVRSLAQRSA+AA+EIK LI Sbjct: 359 VDIISVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVATEVRSLAQRSASAAKEIKALI 418 Query: 412 DDSVHKVGTGSHLVAEAGNSMEKVVHSVRRVTDIVGEISSASSEQSAGIEQIHQAIGAMD 471 DSV KV TG+ LVAEAG +M+++V+S+RRVTDI+GEI++AS EQSAGIEQI+QAIG MD Sbjct: 419 GDSVGKVDTGNKLVAEAGATMDEIVNSIRRVTDIMGEITAASQEQSAGIEQINQAIGQMD 478 Query: 472 DATQQNAALVEQAAAASQSLQEQAAHLVEAVGVFRLN 508 TQQNA+LVE+AAAA++S+Q+QA L + VG F+L+ Sbjct: 479 HVTQQNASLVEEAAAAAESMQDQARKLGQVVGAFKLD 515 >gi|152981467|ref|YP_001352200.1| methyl-accepting chemotaxis protein [Janthinobacterium sp. Marseille] Length = 542 Score = 358 bits (919), Expect = e-100, Method: Compositional matrix adjust. Identities = 233/516 (45%), Positives = 317/516 (61%), Gaps = 9/516 (1%) Query: 1 MTIAKKLYLLISAVILSLCALTALSIYQSHRVSDAASYSTQNTVPSILTLDQAIESVYAI 60 M I +KL L V L +T LS Q +++++ +++ P + + V I Sbjct: 7 MKIRQKLTLSFGVVFALLVVITLLSNIQLGQLNNSIKLISKDRYPKTILANSVQIEVNKI 66 Query: 61 RLNVARYFI--EPTTREKIFPILEVLHEKTQAAFLKYEKECISDAKDEKLLEQDRVAFAA 118 LN+ + +P +++ + +K L+ + +D + + VA Sbjct: 67 ALNLRDIMLSSDPAKIKQLVSDTQASDKKMNEG-LEQLRAVAQTEEDNRYVSAAIVARDQ 125 Query: 119 YEKARHQTLALVGTGQPSELQRAREELLVPAGNRLMKALTEHKQYNEQLGRQEMD--NAA 176 Y AR L L G+ +E + +++ +P + AL Y L D +A Sbjct: 126 YVPARDTLLQLAQDGKTAEAKTYLDQVFMPVQVKYFIALDAMFDYQGSLMNVAGDAASAT 185 Query: 177 SILQSSIV-ITASVSLLIGALVAGASLLLVRLIVSSLRHATHVADAISRYDLTSKIDHAA 235 S+ +I+ I A +SLL+ V + R I L A VA +++ DL+ + Sbjct: 186 SVQARTIINILAGISLLLSIAVG---WWVTRSITRPLNTAVGVARRVAQGDLSGPVFVKT 242 Query: 236 HDEIGHLIQALKRMNDSLCKIIGSVGDSTSTIQVAAGEIASGNLDLSSRTEAQAGSLEET 295 +E+G L+ ALK MND+L I+ V + T TI A+GEIA GN+DLSSRTE QA SLEET Sbjct: 243 TNEVGQLMAALKTMNDNLHHIVTQVRNGTGTIANASGEIARGNMDLSSRTEQQASSLEET 302 Query: 296 VTAMGQLTATVRQNADNAHQANELAASASAIASQAGDVVNEVVVTMDAIHASSLKIVGII 355 +AM +LT+TVR+NADNA QAN+LAASA+ +A Q G VV+EV+ TM AI+ SS KI I Sbjct: 303 ASAMEELTSTVRENADNAQQANQLAASATKVARQGGSVVHEVIATMAAINTSSKKIADIT 362 Query: 356 SVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSAAAAREIKELIDDSV 415 VID IAFQTNILALNAAVEAARAGEQGRGFAVVASEVR+LAQRSA AA EIK LIDDSV Sbjct: 363 GVIDSIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRNLAQRSATAAMEIKALIDDSV 422 Query: 416 HKVGTGSHLVAEAGNSMEKVVHSVRRVTDIVGEISSASSEQSAGIEQIHQAIGAMDDATQ 475 KV GS LV +AG ++++VV SV ++ IV IS+AS EQSAGIEQ+ QAI +D+ TQ Sbjct: 423 AKVDNGSKLVQQAGLTIDEVVTSVGSLSGIVAAISNASQEQSAGIEQVGQAIVQIDEGTQ 482 Query: 476 QNAALVEQAAAASQSLQEQAAHLVEAVGVFRLNRQA 511 QNAALVEQ+AAA+QSL+EQA L++ V +F+L+RQ+ Sbjct: 483 QNAALVEQSAAAAQSLREQADQLMQLVSIFKLDRQS 518 >gi|152981410|ref|YP_001352004.1| methyl-accepting chemotaxis protein [Janthinobacterium sp. Marseille] Length = 549 Score = 355 bits (912), Expect = 3e-99, Method: Compositional matrix adjust. Identities = 220/428 (51%), Positives = 293/428 (68%), Gaps = 8/428 (1%) Query: 87 KTQAAFLKYEKECISDAKDEKLLEQDRVAFAAYEKARHQTLALVGTGQPSELQRAREELL 146 K +A LK + I+ + KL +Q AY+K + + G +E +RA ++ Sbjct: 94 KQGSALLKSLEGMITSDAERKLYQQTIELRKAYQKGKEDVMNAKKGGNKAEAERAYLQIF 153 Query: 147 VPAGN----RLMKALTEHKQYNEQLGRQEMDNAASILQSSIVITASVSLLIGALVAGASL 202 +PA ++++ L+ ++ +Q+ R ++D+A Q S+ + + +L+ L A ++ Sbjct: 154 LPAAKAYQEKVLEFLSVQRKAIDQISR-DIDDAH---QRSLNLMIGLGVLLILLGAACAI 209 Query: 203 LLVRLIVSSLRHATHVADAISRYDLTSKIDHAAHDEIGHLIQALKRMNDSLCKIIGSVGD 262 ++ R I LR A VA + DLT I + DEIG L++AL MND L KI+ V Sbjct: 210 VITRSITKPLRSAIDVASRAADGDLTGDIGKPSKDEIGDLMRALGGMNDGLKKIVNDVKA 269 Query: 263 STSTIQVAAGEIASGNLDLSSRTEAQAGSLEETVTAMGQLTATVRQNADNAHQANELAAS 322 T I A+ EIA GNLDLSSRTE QA SLEET ++M +LT+TV+QNA+NA QAN+LA S Sbjct: 270 GTDFINTASAEIAHGNLDLSSRTEQQAASLEETASSMEELTSTVKQNAENAQQANQLAVS 329 Query: 323 ASAIASQAGDVVNEVVVTMDAIHASSLKIVGIISVIDGIAFQTNILALNAAVEAARAGEQ 382 AS +A++ G VV E++ TM AI++SS KIV II VIDGIAFQTNILALNAAVEAARAGEQ Sbjct: 330 ASDVAAKGGAVVKEMISTMGAINSSSRKIVDIIGVIDGIAFQTNILALNAAVEAARAGEQ 389 Query: 383 GRGFAVVASEVRSLAQRSAAAAREIKELIDDSVHKVGTGSHLVAEAGNSMEKVVHSVRRV 442 GRGFAVVA+EVRSLAQRSAAAA+EIK LI DSV V GS LV+EAG +M+ VV+S+R V Sbjct: 390 GRGFAVVATEVRSLAQRSAAAAKEIKSLIGDSVSNVDAGSKLVSEAGKTMDDVVNSIRHV 449 Query: 443 TDIVGEISSASSEQSAGIEQIHQAIGAMDDATQQNAALVEQAAAASQSLQEQAAHLVEAV 502 TDI+ EI +AS EQS+GIEQ++ AI MD TQQNAALVE+AAAASQSL++QA L + V Sbjct: 450 TDIMNEIMAASQEQSSGIEQVNTAISQMDQVTQQNAALVEEAAAASQSLRDQADKLAQIV 509 Query: 503 GVFRLNRQ 510 VF+L+ + Sbjct: 510 NVFKLDER 517 >gi|152980488|ref|YP_001354515.1| methyl-accepting chemotaxis protein [Janthinobacterium sp. Marseille] Length = 567 Score = 351 bits (900), Expect = 8e-98, Method: Compositional matrix adjust. Identities = 207/362 (57%), Positives = 268/362 (74%), Gaps = 3/362 (0%) Query: 147 VPAGNRLMKALTEHKQYNEQLGRQEMDNAASILQSSIVITASVSLLIGALVAGASLLLVR 206 + A N ++A+ +Q Q + ++D + ++ ++ S++L++ A +A LL R Sbjct: 158 MAAYNESVQAVVSFQQVIFQRAKADVDALYASGRTILITLGSIALILSAFLA---WLLSR 214 Query: 207 LIVSSLRHATHVADAISRYDLTSKIDHAAHDEIGHLIQALKRMNDSLCKIIGSVGDSTST 266 I L +A VA ++ DL +KI +++DE G L++AL+ MND L + + V T Sbjct: 215 SITRPLDYAVSVARTVASGDLRNKIQSSSNDETGQLLRALRDMNDGLVQSVSQVRTGIET 274 Query: 267 IQVAAGEIASGNLDLSSRTEAQAGSLEETVTAMGQLTATVRQNADNAHQANELAASASAI 326 I A+ +IA+GNLDLSSRTE QA SLEET ++M +LT+TV+QNADNA QAN+LA SAS + Sbjct: 275 IATASNQIAAGNLDLSSRTEEQASSLEETASSMEELTSTVKQNADNARQANQLAVSASGV 334 Query: 327 ASQAGDVVNEVVVTMDAIHASSLKIVGIISVIDGIAFQTNILALNAAVEAARAGEQGRGF 386 A + G+VV+ VV TM+ I+AS+ KIV II VIDGIAFQTNILALNAAVEAARAGEQGRGF Sbjct: 335 AEKGGEVVSRVVDTMEQINASAKKIVDIIGVIDGIAFQTNILALNAAVEAARAGEQGRGF 394 Query: 387 AVVASEVRSLAQRSAAAAREIKELIDDSVHKVGTGSHLVAEAGNSMEKVVHSVRRVTDIV 446 AVVASEVR+LAQRSAAAA+EIK LI DSV KV GS LV EAG +M++VV SV+ VTDI+ Sbjct: 395 AVVASEVRNLAQRSAAAAKEIKTLIGDSVDKVELGSKLVGEAGVTMDEVVQSVKHVTDIM 454 Query: 447 GEISSASSEQSAGIEQIHQAIGAMDDATQQNAALVEQAAAASQSLQEQAAHLVEAVGVFR 506 EI +AS EQSAGIEQ++QAIG MD TQQNAALVE+AAAA++SL EQAA L EAV VF+ Sbjct: 455 SEIMAASQEQSAGIEQVNQAIGQMDQVTQQNAALVEEAAAAAESLNEQAAKLAEAVSVFK 514 Query: 507 LN 508 L+ Sbjct: 515 LD 516 Database: BlastDatabases/707/707 Posted date: Apr 13, 2011 12:58 PM Number of letters in database: 1,221,021 Number of sequences in database: 3697 Lambda K H 0.314 0.126 0.328 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3697 Number of Hits to DB: 893,746 Number of extensions: 28843 Number of successful extensions: 185 Number of sequences better than 1.0e-08: 20 Number of HSP's gapped: 153 Number of HSP's successfully gapped: 20 Length of query: 539 Length of database: 1,221,021 Length adjustment: 88 Effective length of query: 451 Effective length of database: 895,685 Effective search space: 403953935 Effective search space used: 403953935 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 132 (55.5 bits)