BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.2884.p (413 letters) Database: BlastDatabases/707/707 3697 sequences; 1,221,021 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|152979799|ref|YP_001352173.1| nitrite reductase (NAD(P)H) lar... 498 e-142 gi|152982729|ref|YP_001352300.1| rubredoxin reductase [Janthinob... 99 7e-22 gi|152981182|ref|YP_001353439.1| putative mercuric reductase [Ja... 62 7e-11 gi|152980459|ref|YP_001352656.1| glutathione reductase [Janthino... 60 2e-10 >gi|152979799|ref|YP_001352173.1| nitrite reductase (NAD(P)H) large subunit [Janthinobacterium sp. Marseille] Length = 812 Score = 498 bits (1283), Expect = e-142, Method: Compositional matrix adjust. Identities = 233/399 (58%), Positives = 307/399 (76%), Gaps = 2/399 (0%) Query: 11 KPSLVVVGNGMAAMRTVEELLKLAPDLYDITVFGAEPHGNYNRIMLSPVLAGDKSIDDIM 70 K LV++GNGMA +RT+EEL K+APD+Y+ITVFGAE + NYNRI+LSPVLAG+++I DIM Sbjct: 3 KMKLVMIGNGMAGVRTLEELRKIAPDVYEITVFGAEAYANYNRILLSPVLAGEQTIKDIM 62 Query: 71 LNPRAWYQENGITLHAGDPVIHIDRRLRSVHAKSGLSVKYDRLLLATGSTPFIIPVPGHQ 130 LN WY EN ITLH G ++ IDR R V A G YDRLL+ATGS PF++P+PG Sbjct: 63 LNDVDWYAENDITLHLGKKIVEIDRIKRVVIADDGTIAPYDRLLMATGSNPFMLPIPGKD 122 Query: 131 LPGVIAFRDIQDVDTMLQAARTHRHAVVIGGGLLGLEAANGLMRQGMEVTVVHVTDALMN 190 L GVI++RDIQD + M++AA+ H+ A+VIGGGLLGLEAANGL +GM+VTVVH+ LM Sbjct: 123 LEGVISYRDIQDTNAMIEAAKVHKQAIVIGGGLLGLEAANGLKLRGMDVTVVHLPATLME 182 Query: 191 QQLDKPAAELLKKALEAKGLRFLLNAHTEEII--GPDRVTAVRFKDGSRIPADLVVMTAG 248 +QLD+ A ++L+K+LE +GL FLL +++EII RV A+RF DGS +PA L+VM G Sbjct: 183 RQLDEAAGKMLQKSLEDRGLNFLLGKNSQEIISDANGRVQALRFTDGSEVPAQLIVMAVG 242 Query: 249 VRPNIALAKSAGLHCERAIIVDDTLQTYDPRIYAVGECVQHRQATFGLVAPIWDQARVCG 308 +RPN LA+SAGL+C R I+V+DT+QTYDPR+YAVGECV HR +GLVAP+++ A+VC Sbjct: 243 IRPNTTLAESAGLYCNRGIVVNDTMQTYDPRVYAVGECVNHRGTAYGLVAPLFEMAKVCA 302 Query: 309 AHLAGAGHRRYVQQATATKLKVTGVDLYSAGDFIGGDDTEDLVVRDPRRGIYKRLVLRGS 368 HLA G RY T+TKLKVTG+DL+SAG+F+GG+ TE++++ DP G+YK+LVL+ Sbjct: 303 NHLANYGIGRYQGSVTSTKLKVTGIDLFSAGEFLGGEGTEEILLSDPIGGVYKKLVLKDD 362 Query: 369 RLVGAVLYGDVKDGPWYFDLIQSGRDISAFRRELPFGQA 407 +L+GA LYGD DG WYF+L++ G+DIS R L FG+A Sbjct: 363 KLIGACLYGDTVDGSWYFNLLREGKDISEIRDTLMFGEA 401 >gi|152982729|ref|YP_001352300.1| rubredoxin reductase [Janthinobacterium sp. Marseille] Length = 401 Score = 98.6 bits (244), Expect = 7e-22, Method: Compositional matrix adjust. Identities = 84/315 (26%), Positives = 144/315 (45%), Gaps = 15/315 (4%) Query: 11 KPSLVVVGNGMAAMRTVEELLKLAPDLYDITVFGAEPHGNYNRIMLSPVLAGDKSIDDIM 70 KP ++++G G+A E KL + + A+ G Y++ MLS A K + ++ Sbjct: 2 KP-IIIIGAGLAGYTVAREFRKL-DKTTPLIMITADSGGFYSKPMLSNAFAHGKQAEQMI 59 Query: 71 LNPRAWYQEN-GITLHAGDPVIHIDRRLRSVHAKSGLSVKYDRLLLATGSTPFIIPVPGH 129 + E T+ A V ID ++V +G+ +Y++L+LA+G+ + + G Sbjct: 60 THSATQMAEQLNATIQANTHVTGIDTTTKTVTTDTGV-FEYEKLVLASGAQAIHLGLKGE 118 Query: 130 QLPGVIAFRDIQDVDTMLQAARTHRHA-----VVIGGGLLGLEAANGLMRQGMEVTVVHV 184 V++ + D + ++A ++G GL+G E A+ L G VT+V Sbjct: 119 AADQVLSVNHVDDYAKFRAHISSQKNANPVRVTILGAGLIGCEFADDLAGAGHSVTLVDP 178 Query: 185 TDALMNQQLDKPAAELLKKALEAKGLRFLLNAHTEEIIGPDRVTAVRFKDGSRIPADLVV 244 + + + L+ AL A+G++F LN E + D V DG+ + AD+V+ Sbjct: 179 SSRPLAALAAPALSAKLQAALSARGVKFHLNTVAESVSHGDNELRVTLADGNTVEADVVL 238 Query: 245 MTAGVRPNIALAKSAGLHCERAIIVDDTLQTYDPRIYAVGECVQHRQA------TFGLVA 298 G+RP++ LA +A L R II+D QT IYA+G+C ++ T + Sbjct: 239 SAVGLRPDLRLAHAAQLKTNRGIIIDTFGQTSAADIYALGDCAEYTSVADGSTHTLPYIT 298 Query: 299 PIWDQARVCGAHLAG 313 PI R L G Sbjct: 299 PIMTAGRAIAKTLTG 313 >gi|152981182|ref|YP_001353439.1| putative mercuric reductase [Janthinobacterium sp. Marseille] Length = 561 Score = 62.0 bits (149), Expect = 7e-11, Method: Compositional matrix adjust. Identities = 49/191 (25%), Positives = 87/191 (45%), Gaps = 13/191 (6%) Query: 108 VKYDRLLLATGSTPFIIPVPGHQLPGVIAFRDIQDVDTMLQAARTHRHAVVIGGGLLGLE 167 V +DR L+ATG++P + P+PG + + DT+ + VIG ++ LE Sbjct: 231 VAFDRCLVATGASPAVPPIPGLKESPYWTSTEALVSDTLPE------RLAVIGSSVVALE 284 Query: 168 AANGLMRQGMEVTVVHVTDALMNQQLDKPAAELLKKALEAKGLRFLLNAHTEEIIGPDRV 227 A R G +VT++ D E + A A+G++ L + ++ + Sbjct: 285 LAQAFARLGSQVTILARNTLFFRD--DPSIGEAVTAAFRAEGIKVLEHTQASQVAHVNGE 342 Query: 228 TAVRFKDGSRIPADLVVMTAGVRPN---IAL-AKSAGLHCERAIIVDDTLQTYDPRIYAV 283 + G + AD +++ G PN +AL A ++ + AI++D ++T P IYA Sbjct: 343 FVLTTGHG-EVRADKLLVATGRTPNTRSLALDAAGVTVNAQGAIVIDKGMRTSTPHIYAA 401 Query: 284 GECVQHRQATF 294 G+C Q + Sbjct: 402 GDCTDQPQFVY 412 >gi|152980459|ref|YP_001352656.1| glutathione reductase [Janthinobacterium sp. Marseille] Length = 462 Score = 60.5 bits (145), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 73/268 (27%), Positives = 120/268 (44%), Gaps = 31/268 (11%) Query: 103 KSGLSVKYDRLLLATGSTPFI-IPVPGHQLPGVIAFRDIQDVDTMLQAARTHRHAVVIGG 161 K+G +V +++++ATG TP +PGH+L I+ + D+ + R ++ GG Sbjct: 127 KTGRTVTAEKIVIATGGTPNPHAALPGHEL--CISSNEAFDLPEL------PRSILIAGG 178 Query: 162 GLLGLEAANGLMRQGMEVTVVHVTDALMNQQLDKPAAELLKKALEAKGLRFLLNAHTEEI 221 G + +E AN G VT+++ ++++ D+ L KA+ KG+R +L E I Sbjct: 179 GYIAVEFANIFHGLGAHVTLIYRGKEILSR-FDQDMRHGLHKAMTEKGIRIMLTDVIENI 237 Query: 222 IGP-DRVTAVRFKDGSRIPADLVVMTAGVRPN---IALAKSAGLHCER--AIIVDDTLQT 275 + + K+G + D V++ G PN + L ++AG+ AIIVD +T Sbjct: 238 SKTAEGGLMAKTKNGESMVVDSVMLALGRDPNTQGLGL-EAAGVEINERGAIIVDKYSRT 296 Query: 276 YDPRIYAVGECVQHRQATFGLVAPIWDQARVCGAHLAGAGHRRYVQQATATKLKVTGVDL 335 P IYA+G+ Q T P+ +C Y TA V + Sbjct: 297 NVPNIYALGDVTDRVQLT-----PVAIHEAMCFIET------EYKNNPTAPDHDVIATAV 345 Query: 336 YSAGDFIG--GDDTEDLVVRDPRRGIYK 361 +S + IG G ED V R IY+ Sbjct: 346 FSQPE-IGTVGLSEEDAVKRHSELDIYR 372 Database: BlastDatabases/707/707 Posted date: Apr 13, 2011 12:58 PM Number of letters in database: 1,221,021 Number of sequences in database: 3697 Lambda K H 0.322 0.139 0.411 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3697 Number of Hits to DB: 944,722 Number of extensions: 39310 Number of successful extensions: 114 Number of sequences better than 1.0e-08: 5 Number of HSP's gapped: 112 Number of HSP's successfully gapped: 5 Length of query: 413 Length of database: 1,221,021 Length adjustment: 86 Effective length of query: 327 Effective length of database: 903,079 Effective search space: 295306833 Effective search space used: 295306833 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 131 (55.1 bits)