BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.2882.p (857 letters) Database: BlastDatabases/707/707 3697 sequences; 1,221,021 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|152979799|ref|YP_001352173.1| nitrite reductase (NAD(P)H) lar... 427 e-120 gi|152982729|ref|YP_001352300.1| rubredoxin reductase [Janthinob... 61 3e-10 >gi|152979799|ref|YP_001352173.1| nitrite reductase (NAD(P)H) large subunit [Janthinobacterium sp. Marseille] Length = 812 Score = 427 bits (1097), Expect = e-120, Method: Compositional matrix adjust. Identities = 271/799 (33%), Positives = 417/799 (52%), Gaps = 50/799 (6%) Query: 1 MKIIVIGHGMVGHKFLECLAESGAGDLHVTILCEEPRPAYDRVHLSEFFAG-KSAEDLSL 59 MK+++IG+GM G + LE L + +T+ E Y+R+ LS AG ++ +D+ L Sbjct: 4 MKLVMIGNGMAGVRTLEELRKIAPDVYEITVFGAEAYANYNRILLSPVLAGEQTIKDIML 63 Query: 60 VAPGFFDAGQSPVQFDLKLNAKAQEIDLEHKQVRVNLSGVEQILSYDKLVLATGSYPFVP 119 ++ + L L K EID + RV ++ I YD+L++ATGS PF+ Sbjct: 64 NDVDWY----AENDITLHLGKKIVEID---RIKRVVIADDGTIAPYDRLLMATGSNPFML 116 Query: 120 TVAGNQRKDCFVYRTIEDLEAMLECGNRSKSGVVIGGGLLGLECAKALRDLKLETHVVEF 179 + G + YR I+D AM+E K +VIGGGLLGLE A L+ ++ VV Sbjct: 117 PIPGKDLEGVISYRDIQDTNAMIEAAKVHKQAIVIGGGLLGLEAANGLKLRGMDVTVVHL 176 Query: 180 APRLMAVQVDDSGGRILRQKIEELGVTAHTQKNTVEIV-DGKQHTHRMNFEDGSHLETDM 238 LM Q+D++ G++L++ +E+ G+ KN+ EI+ D + F DGS + + Sbjct: 177 PATLMERQLDEAAGKMLQKSLEDRGLNFLLGKNSQEIISDANGRVQALRFTDGSEVPAQL 236 Query: 239 IVFSAGIRPRDELARHAGLKVGERGGIVIDNCCLTSDAAVYAIGECALWNGKIFGLVAPG 298 IV + GIRP LA AGL GIV+++ T D VYA+GEC G +GLVAP Sbjct: 237 IVMAVGIRPNTTLAESAGLYCNR--GIVVNDTMQTYDPRVYAVGECVNHRGTAYGLVAPL 294 Query: 299 YDMARTAAKHLLSHRDDAIEVPQFNGADMSTKLKLMGVDVASIGDAHGKQAGSRSYQFTD 358 ++MA+ A HL ++ + ++ G+ STKLK+ G+D+ S G+ G + G+ +D Sbjct: 295 FEMAKVCANHLANY-----GIGRYQGSVTSTKLKVTGIDLFSAGEFLGGE-GTEEILLSD 348 Query: 359 ERKQIYKKIVVSESGKHLLGAVMVGDAAEYGTLLQMMLNKIELPESPEFLILPQSDGKAK 418 +YKK+V+ + L+GA + GD + ++ ++ E + L+ +++ + Sbjct: 349 PIGGVYKKLVLKDD--KLIGACLYGDTVDGSWYFNLLREGKDISEIRDTLMFGEAN-TGR 405 Query: 419 PG-LGVD------ALPESAQICSCNNVSKGQLCAAVAS-GVTNIGDLKACTKAGTACGGC 470 PG +G + A+P++A++C CN V KG + A+ G+ I D++ TKA +CG C Sbjct: 406 PGDVGHEGFSKAAAMPDTAEVCGCNGVCKGTIVKAIKEKGLFTIEDVRKHTKASASCGSC 465 Query: 471 VPLVTQVMKAEMKKQGMAVNNH--VCEHFPYSRQEIHHLVRVGQIKSFDELLAKHG--KG 526 LV Q++ A A N +C ++ QE+ ++V ++ + ++A Sbjct: 466 TGLVEQIIMATAGGDYSASNKAKPMCGCTDHTHQEVRDAIKVEKLLTVAGVMAHMNWRTP 525 Query: 527 LGCDICKPMVANVLASLWNDFVLKKEHAGLQDSNDYFL-----GNIQKDGTYSVVPRMAG 581 GC C+P + L S W H D ++ NIQKDGT+SV+PRM G Sbjct: 526 NGCSSCRPGINYYLISTW-------PHEAKDDPQSRYINERAHANIQKDGTFSVIPRMWG 578 Query: 582 GEVTPDGLIAVGQIAKKYGLYT-KITGGQRVDLFGARVDQLPDIWEALIAAGFETGHAYG 640 GE L + + K+ + T K+TGGQR+DL G + + L +W+ L G +G Y Sbjct: 579 GETNSSELRRIADVVDKFKIPTVKVTGGQRIDLLGVKKEDLRAVWQDL---GMPSGLGYA 635 Query: 641 KSLRTVKSCVGSTWCRYGVGDSVGFAVRLENRYKGLRSPHKIKFGVSGCTRECAEAQGKD 700 K LRTVK+CVGS WCR+G DS +LE++ + +PHK+K VSGC R CAEA KD Sbjct: 636 KGLRTVKTCVGSEWCRFGTQDSTKMGQQLEHQLARMYAPHKVKLAVSGCPRNCAEAGIKD 695 Query: 701 VGIIATDKGWNLYVCGNGGMKPRHAELIASDLDEATLTRYVDRFLMFYVRTADRLQRTST 760 VG+I D GW +YV GNGG+K AE + Y FL Y L+RT Sbjct: 696 VGVIGVDSGWEIYVGGNGGIKTEVAEFFVKLKTHEEVLEYAGAFLQLYREEGWYLERTVH 755 Query: 761 WRENLEGGLAYLKSVVIDD 779 + + GL Y K V++D Sbjct: 756 YLARV--GLEYAKQKVVED 772 >gi|152982729|ref|YP_001352300.1| rubredoxin reductase [Janthinobacterium sp. Marseille] Length = 401 Score = 61.2 bits (147), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 77/303 (25%), Positives = 124/303 (40%), Gaps = 39/303 (12%) Query: 3 IIVIGHGMVGHKFLECLAESGAGDLHVTILCEEPRPAYDRVHLSEFFA-GKSAEDLSLVA 61 II+IG G+ G+ + + I + Y + LS FA GK AE + Sbjct: 4 IIIIGAGLAGYTVAREFRKLDKTTPLIMITADSGG-FYSKPMLSNAFAHGKQAEQMIT-- 60 Query: 62 PGFFDAGQSPVQFDLKLNAKAQEIDLEHKQVRVNLSGVEQ----------ILSYDKLVLA 111 S Q +LNA Q +++G++ + Y+KLVLA Sbjct: 61 -------HSATQMAEQLNATIQ--------ANTHVTGIDTTTKTVTTDTGVFEYEKLVLA 105 Query: 112 TGSYPFVPTVAGNQRKDCFVYRTIEDLEAMLECGNRSKSG-----VVIGGGLLGLECAKA 166 +G+ + G ++D + K+ ++G GL+G E A Sbjct: 106 SGAQAIHLGLKGEAADQVLSVNHVDDYAKFRAHISSQKNANPVRVTILGAGLIGCEFADD 165 Query: 167 LRDLKLETHVVEFAPRLMAVQVDDSGGRILRQKIEELGVTAHTQKNTV-EIVDGKQHTHR 225 L +V+ + R +A + L+ + GV H NTV E V + R Sbjct: 166 LAGAGHSVTLVDPSSRPLAALAAPALSAKLQAALSARGVKFHL--NTVAESVSHGDNELR 223 Query: 226 MNFEDGSHLETDMIVFSAGIRPRDELARHAGLKVGERGGIVIDNCCLTSDAAVYAIGECA 285 + DG+ +E D+++ + G+RP LA A LK GI+ID TS A +YA+G+CA Sbjct: 224 VTLADGNTVEADVVLSAVGLRPDLRLAHAAQLKTNR--GIIIDTFGQTSAADIYALGDCA 281 Query: 286 LWN 288 + Sbjct: 282 EYT 284 Database: BlastDatabases/707/707 Posted date: Apr 13, 2011 12:58 PM Number of letters in database: 1,221,021 Number of sequences in database: 3697 Lambda K H 0.319 0.137 0.407 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3697 Number of Hits to DB: 2,036,285 Number of extensions: 87013 Number of successful extensions: 257 Number of sequences better than 1.0e-08: 3 Number of HSP's gapped: 248 Number of HSP's successfully gapped: 3 Length of query: 857 Length of database: 1,221,021 Length adjustment: 91 Effective length of query: 766 Effective length of database: 884,594 Effective search space: 677599004 Effective search space used: 677599004 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 134 (56.2 bits)