BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.2878.p
         (163 letters)

Database: BlastDatabases/707/707 
           3697 sequences; 1,221,021 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|152980778|ref|YP_001354246.1| Mg2+ transport ATPase [Janthino...    61   3e-11

>gi|152980778|ref|YP_001354246.1| Mg2+ transport ATPase
           [Janthinobacterium sp. Marseille]
          Length = 238

 Score = 61.2 bits (147), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 52/156 (33%), Positives = 86/156 (55%), Gaps = 16/156 (10%)

Query: 14  AMLIGCAIGIDRNLRGKPTGVKTLGLVGLGSALVTLAAMNFALDAAD--HSRDAISRAIQ 71
           A ++G  IG +R  R +  G++T  LV +G+A+         +D A+  H     +  I 
Sbjct: 22  AFILGGLIGFERQYRQRTAGLRTNVLVAIGAAMF--------VDMANRLHGHAGATHVIA 73

Query: 72  GVITGIGFLGAGVIVHEQRSEKVRGLTTAASIWVTAAVGIVCGAGWWRVALMASGLIVVL 131
            V++GIGFLGAGVI+ E+ +  VRG+ TAA++W +AA+G   GA     A++ +  I+  
Sbjct: 74  YVVSGIGFLGAGVIMREEGN--VRGINTAATLWGSAAMGAAAGADLIFEAILGTIFILAA 131

Query: 132 FMVGRPLEHFLHRQWLRKTEDERAD----ISAREED 163
             + RP+ + ++RQ L  T  E  +    I++RE  
Sbjct: 132 NTLLRPIVNAINRQPLDVTSAEVTNTVCVITSREHQ 167


  Database: BlastDatabases/707/707
    Posted date:  Apr 13, 2011 12:58 PM
  Number of letters in database: 1,221,021
  Number of sequences in database:  3697
  
Lambda     K      H
   0.326    0.140    0.425 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3697
Number of Hits to DB: 341,429
Number of extensions: 12813
Number of successful extensions: 91
Number of sequences better than 1.0e-08: 3
Number of HSP's gapped: 87
Number of HSP's successfully gapped: 3
Length of query: 163
Length of database: 1,221,021
Length adjustment: 76
Effective length of query: 87
Effective length of database: 940,049
Effective search space: 81784263
Effective search space used: 81784263
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 126 (53.1 bits)