BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.2876.p
         (190 letters)

Database: BlastDatabases/707/707 
           3697 sequences; 1,221,021 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|152981766|ref|YP_001351994.1| phospholipid-binding protein [J...    73   1e-14

>gi|152981766|ref|YP_001351994.1| phospholipid-binding protein
           [Janthinobacterium sp. Marseille]
          Length = 215

 Score = 73.2 bits (178), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 51/175 (29%), Positives = 77/175 (44%), Gaps = 42/175 (24%)

Query: 50  MGLNRSPQLSWSGAPDGTKSFAVTVYDPDAPTGS-----------------GWWHWTVFN 92
           +  N++P L+WSG P  TKS A+ V+DPD P+                    ++HWT+ +
Sbjct: 31  LSANKNPHLAWSGLPAATKSLALIVHDPDVPSRGDDVNQEGKTVPADLPRVDFFHWTLVD 90

Query: 93  LPASVR-----SLPGGINAQGQGLPA-------GAIQGRTDF------------GSSGFG 128
           LP   +     S   G+  +G+  PA       GA  G  D+               G+ 
Sbjct: 91  LPPDTQQIAAGSFAHGVTPRGKSGPAIANSPVPGARHGINDYTGWFAQDVDMAGAYFGYD 150

Query: 129 GACPPEGDK-PHRYQFIVWALKTEKLPLDAQASGAMLGFLLNASALGQAKLTAYY 182
           G CPP  D   HRY F ++AL    +P+D Q SG  +   +    L +A ++A Y
Sbjct: 151 GPCPPWNDAIVHRYVFTLYALDIASVPVDGQFSGQQVRDAIAGHVLAEASVSASY 205


  Database: BlastDatabases/707/707
    Posted date:  Apr 13, 2011 12:58 PM
  Number of letters in database: 1,221,021
  Number of sequences in database:  3697
  
Lambda     K      H
   0.317    0.133    0.414 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3697
Number of Hits to DB: 489,057
Number of extensions: 22667
Number of successful extensions: 56
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 54
Number of HSP's successfully gapped: 1
Length of query: 190
Length of database: 1,221,021
Length adjustment: 78
Effective length of query: 112
Effective length of database: 932,655
Effective search space: 104457360
Effective search space used: 104457360
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 127 (53.5 bits)