BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.2872.p (303 letters) Database: BlastDatabases/707/707 3697 sequences; 1,221,021 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|152980915|ref|YP_001353545.1| LysR family transcriptional reg... 196 1e-51 gi|152980832|ref|YP_001354031.1| LysR family transcriptional reg... 192 3e-50 gi|152981563|ref|YP_001352068.1| LysR family transcriptional reg... 181 7e-47 gi|152980333|ref|YP_001353265.1| LysR family transcriptional reg... 180 1e-46 gi|152980272|ref|YP_001353541.1| LysR family transcriptional reg... 174 9e-45 >gi|152980915|ref|YP_001353545.1| LysR family transcriptional regulator [Janthinobacterium sp. Marseille] Length = 300 Score = 196 bits (499), Expect = 1e-51, Method: Compositional matrix adjust. Identities = 111/300 (37%), Positives = 170/300 (56%), Gaps = 5/300 (1%) Query: 1 MDKLQAMETFVAVVESGSFVAAVDITGQSKPAVSRQVSELEQFLGIRLLHRTTRRLSLTD 60 MD+L AM+ FV VV+SGS AA D S+P VSR ++ELE++ G RLLHRTTR+LSLT Sbjct: 1 MDRLSAMQVFVTVVDSGSQSAAADQLDLSRPVVSRYLAELEEWAGARLLHRTTRKLSLTA 60 Query: 61 EGRLYFARCKELLESIQDVESEVGLNSDQACGRLRIGVPQDFGVEQLAPLWGKFTQQHPQ 120 G RC+++LE D+++ V + D G LRI V FG LA + + +P Sbjct: 61 AGAEMLPRCRQMLELATDMKNVVAIPEDAPQGLLRITVSTSFGQSHLAAAVADYVKLYPG 120 Query: 121 ITLNITLSDRTIDLLEEGFDMAIRISTLGDSRMVARPLAPVRMIACASPEFLARHGTPTT 180 +T+++ + DR ++L+EE D+AIRIS D ++AR L R + CA+P +L HG PT Sbjct: 121 VTVDMLVLDRVVNLVEERIDLAIRISKELDPNLIARRLTVCRSVVCAAPAYLHEHGKPTQ 180 Query: 181 PAELREFPFISYSYRANGDEWSFKHLHGDTCQVRVRSTVYVNNGATCRAMAIAGQGIAIQ 240 +L +++SY G W + V V+ + N+ ++ A+AG GIA+ Sbjct: 181 AEQLVLHNCLTHSYY--GSVWLLER-DKLPVNVAVKGNISANDASSLLPAALAGAGIAML 237 Query: 241 PDFIVNAAIQAGQLVELFEGWSTGEQLVVHTLYPTRTHLPPKVQRMRDFLVEQF-KVPPW 299 P F+ I++GQL+ L + ++ + +Y +R H+P ++ M DFL +F P W Sbjct: 238 PTFLAAPYIRSGQLLPLLPEYHP-QEFGLFGVYASRKHMPATLRTMLDFLAARFTDEPDW 296 >gi|152980832|ref|YP_001354031.1| LysR family transcriptional regulator [Janthinobacterium sp. Marseille] Length = 304 Score = 192 bits (487), Expect = 3e-50, Method: Compositional matrix adjust. Identities = 105/296 (35%), Positives = 170/296 (57%), Gaps = 5/296 (1%) Query: 1 MDKLQAMETFVAVVESGSFVAAVDITGQSKPAVSRQVSELEQFLGIRLLHRTTRRLSLTD 60 M+ L + F +V+ GS A G + PAV+++++ LEQ LG+RLL+RTTR +S+T Sbjct: 1 MNDLSDLAFFSVLVKQGSLAAVARELGVTPPAVTKRLANLEQRLGVRLLNRTTRTMSVTH 60 Query: 61 EGRLYFARCKELLESIQDVESEVGLNSDQACGRLRIGVPQDFGVEQLAPLWGKFTQQHPQ 120 EG +Y A +L I+++E V + G LRI FG +AP F +++P+ Sbjct: 61 EGEIYLAEGARILTEIEELERAVSRSRAVPKGLLRINATFGFGRRHIAPAVSDFIEKYPE 120 Query: 121 ITLNITLSDRTIDLLEEGFDMAIRISTLGDSRMVARPLAPVRMIACASPEFLARHGTPTT 180 I + + LSDR +L+++ FD+ IRI + D+R++AR +A R + CA+P ++ RHGTP+ Sbjct: 121 IEVQLQLSDRPANLIDQAFDIGIRIGEMPDARIIARKIAANRRLLCAAPAYIKRHGTPSV 180 Query: 181 PAELREFPFISYSYRANGDEWSFKHLHGDTCQ--VRVRSTVYVNNGATCRAMAIAGQGIA 238 P +L++ I R N + HLH Q ++VR + N+G T A A+AG GI Sbjct: 181 PRDLQKLQCI--VLRENDAAYGSWHLHKGKRQESIKVRGALSSNDGETTLAWALAGHGIL 238 Query: 239 IQPDFIVNAAIQAGQLVELFEGWSTGEQLVVHTLYPTRTHLPPKVQRMRDFLVEQF 294 ++ + V A +++G+LVE+ WS ++ +YP R +L KV DF+ +F Sbjct: 239 MRSQWDVAAYLRSGRLVEVLADWSLPPS-DIYAVYPERLNLSAKVTAFVDFVSARF 293 >gi|152981563|ref|YP_001352068.1| LysR family transcriptional regulator [Janthinobacterium sp. Marseille] Length = 301 Score = 181 bits (458), Expect = 7e-47, Method: Compositional matrix adjust. Identities = 94/302 (31%), Positives = 161/302 (53%), Gaps = 1/302 (0%) Query: 1 MDKLQAMETFVAVVESGSFVAAVDITGQSKPAVSRQVSELEQFLGIRLLHRTTRRLSLTD 60 MDKL+ +E FV VE SF AA + V R++ LE+ LG+RLLHR+TRRL+LT+ Sbjct: 1 MDKLKQIEAFVMAVEHNSFAAAALALQVTPVMVGRRIDTLEKRLGVRLLHRSTRRLALTE 60 Query: 61 EGRLYFARCKELLESIQDVESEVGLNSDQACGRLRIGVPQDFGVEQLAPLWGKFTQQHPQ 120 EG +Y C+++L ++ ES + ++ G L + P FG + +AP +F +QHP Sbjct: 61 EGSVYLEHCRKMLNELEHAESALSAGHNKVTGHLIVSAPASFGRQHVAPYAQEFLEQHPG 120 Query: 121 ITLNITLSDRTIDLLEEGFDMAIRISTLGDSRMVARPLAPVRMIACASPEFLARHGTPTT 180 + ++ L+DR +DL++EG+DM IRI D VA LA + + C + E+ +HG P T Sbjct: 121 LKMSFNLTDRVVDLVQEGYDMGIRIGGNIDPNFVAIKLAANKRVVCGTREYFKKHGKPKT 180 Query: 181 PAELREFPFISYSYRANGDEWSFKHLHGDTCQVRVRSTVYVNNGATCRAMAIAGQGIAIQ 240 +L +S++ + + + G T VR + ++ N+G G GIA + Sbjct: 181 LDDLANHNCLSFNLQGGQQRGWYFNYRGKTVSVRAQGSLDCNDGELLHRWMTEGLGIAWR 240 Query: 241 PDFIVNAAIQAGQLVELFEGWSTGEQLVVHTLYPTRTHLPPKVQRMRDFLVEQFKVPPWC 300 + + +++G L + + ++ E ++ +YP + ++P KV+ L + P + Sbjct: 241 SVWEIQRQLESGMLETVLDDYAIPEYDIM-AVYPQQRNVPAKVRLFISHLKAMYSQPGYW 299 Query: 301 PR 302 R Sbjct: 300 SR 301 >gi|152980333|ref|YP_001353265.1| LysR family transcriptional regulator [Janthinobacterium sp. Marseille] Length = 293 Score = 180 bits (456), Expect = 1e-46, Method: Compositional matrix adjust. Identities = 107/288 (37%), Positives = 163/288 (56%), Gaps = 2/288 (0%) Query: 7 METFVAVVESGSFVAAVDITGQSKPAVSRQVSELEQFLGIRLLHRTTRRLSLTDEGRLYF 66 ++TFVAV++SG+ AA GQ+ AVSR ++ LE+ L LL RTTRR+ LTDEGRL Sbjct: 8 LKTFVAVIDSGTLGAAAQHLGQTTSAVSRALARLEEKLATTLLTRTTRRMELTDEGRLLL 67 Query: 67 ARCKELLESIQDVESEVGLNSDQACGRLRIGVPQDFGVEQLAPLWGKFTQQHPQITLNIT 126 + + +L ++ + E + + + GRLRI F + + P +F + +P ITL +T Sbjct: 68 TKARAILAALDEAEESIRVRRQRPSGRLRIDAASPFILHVIVPHVAEFRELYPDITLELT 127 Query: 127 LSDRTIDLLEEGFDMAIRISTLGDSRMVARPLAPVRMIACASPEFLARHGTPTTPAELRE 186 +D+ DLLE D+AIR+ L DS + ARPL M ASP++L RHG P PA+L + Sbjct: 128 SNDQIADLLEHRTDIAIRVGELTDSTLHARPLRSGAMAILASPDYLRRHGIPKKPADLAQ 187 Query: 187 FPFISYSYRANGDEWSFKHLHGDTCQVRVRSTVYVNNGATCRAMAIAGQGIAIQPDFIVN 246 + + NG+ W +H G+ + +Y ++G T RA+A+AGQGIA +F+ Sbjct: 188 HETLGFLQYENGNSWPLRHDGGE--WLATTPAIYASSGETLRALALAGQGIACLSEFMTK 245 Query: 247 AAIQAGQLVELFEGWSTGEQLVVHTLYPTRTHLPPKVQRMRDFLVEQF 294 I AG LV + + TG Q +H +Y T L ++ +FL ++ Sbjct: 246 QDIAAGTLVPILAKYYTGYQRPIHAVYYRNTQLSRRISCFLEFLQKKM 293 >gi|152980272|ref|YP_001353541.1| LysR family transcriptional regulator [Janthinobacterium sp. Marseille] Length = 308 Score = 174 bits (440), Expect = 9e-45, Method: Compositional matrix adjust. Identities = 94/297 (31%), Positives = 167/297 (56%), Gaps = 5/297 (1%) Query: 1 MDKLQAMETFVAVVESGSFVAAVDITGQSKPAVSRQVSELEQFLGIRLLHRTTRRLSLTD 60 MD + + F +V+ GS AA G + P+VS++++ +E L +RLL+RTTRR+SLT Sbjct: 1 MDGISDLAFFSLLVKRGSLAAAAQELGVTPPSVSKRLAGIESRLRVRLLNRTTRRISLTP 60 Query: 61 EGRLYFARCKELLESIQDVESEVGLNSDQACGRLRIGVPQDFGVEQLAPLWGKFTQQHPQ 120 EG +Y A L+ ++ +E + + A G L++ FG + P F + +P+ Sbjct: 61 EGEIYLADGTRLVAELEALEQRISGGNITAKGLLKVSATFGFGRRHITPQLSAFARLYPE 120 Query: 121 ITLNITLSDRTIDLLEEGFDMAIRISTLGDSRMVARPLAPVRMIACASPEFLARHGTPTT 180 + + + L+DR ++L+E+GFD IR + D+R+ AR +A R + CASP +L +HGTP Sbjct: 121 VEVQLHLTDRPVNLVEQGFDADIRFGQIPDARLSARKIADNRRLVCASPAYLQKHGTPLV 180 Query: 181 PAELREFPFISYSYRANGDEWSFKHLHGDTCQ--VRVRSTVYVNNGATCRAMAIAGQGIA 238 P +L++ I R + + + H Q V+VR + N+G + A+ GQGI Sbjct: 181 PRDLQQHNCI--LLRESDEIYGSWHFSSGIKQETVKVRGALSANDGECATSWALDGQGIV 238 Query: 239 IQPDFIVNAAIQAGQLVELFEGWSTGEQLVVHTLYPTRTHLPPKVQRMRDFLVEQFK 295 ++ ++ V +++G+L + E W Q ++ ++PT+ HL K + + DF+++ F+ Sbjct: 239 VRSEWDVAPYLRSGRLRAVLEEWQL-PQADIYIVFPTKNHLSAKTRALVDFMLQAFE 294 Database: BlastDatabases/707/707 Posted date: Apr 13, 2011 12:58 PM Number of letters in database: 1,221,021 Number of sequences in database: 3697 Lambda K H 0.322 0.136 0.412 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3697 Number of Hits to DB: 638,445 Number of extensions: 24140 Number of successful extensions: 146 Number of sequences better than 1.0e-08: 31 Number of HSP's gapped: 119 Number of HSP's successfully gapped: 31 Length of query: 303 Length of database: 1,221,021 Length adjustment: 83 Effective length of query: 220 Effective length of database: 914,170 Effective search space: 201117400 Effective search space used: 201117400 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 129 (54.3 bits)