BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.2869.p (282 letters) Database: BlastDatabases/707/707 3697 sequences; 1,221,021 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|152980609|ref|YP_001354932.1| ABC transport system ATP-bindin... 244 3e-66 gi|152980121|ref|YP_001354989.1| ABC transport system ATP-bindin... 187 8e-49 gi|152980415|ref|YP_001352504.1| sulfate transport system ATP-bi... 127 6e-31 gi|152979961|ref|YP_001354796.1| spermidine/putrescine transport... 119 2e-28 gi|152983439|ref|YP_001353228.1| ABC-type transporter ATPase com... 117 8e-28 >gi|152980609|ref|YP_001354932.1| ABC transport system ATP-binding protein [Janthinobacterium sp. Marseille] Length = 283 Score = 244 bits (624), Expect = 3e-66, Method: Compositional matrix adjust. Identities = 122/246 (49%), Positives = 176/246 (71%) Query: 20 IIDVRGLRNQFGAQVVHDQLALQVRRGEILGVVGGSGTGKSVLLRSIVGLQRPAAGQVKV 79 II++ L +FG VVH+ L+L++ +GEI+ +VGGSG+GK+VLLR ++GL +PA+G V+V Sbjct: 19 IIEIENLSTRFGDVVVHENLSLKINQGEIVSLVGGSGSGKTVLLRQMLGLNQPASGSVRV 78 Query: 80 FGQDLSALSSEVRSRYERRFGVLFQQGALFSSLTVLENIALPLTEYGGLNAEEARGVSAM 139 FG+D++ + + + R+G+LFQQGALFS+LTV +N+A P+ E L + R + + Sbjct: 79 FGEDINRIDAGHLQQLRNRWGMLFQQGALFSALTVFDNVAQPMRELRVLPKQLIRDAALL 138 Query: 140 KLALAGLPIAAGDKYPAALSGGMIKRAALARALALDPDILFLDEPTAGLDPISAAAFDRL 199 KL +AG+ K PA LSGGMIKR ALARALAL+P++LFLDEPTAGLDP ++ +F L Sbjct: 139 KLQMAGIGPEHALKMPADLSGGMIKRVALARALALEPELLFLDEPTAGLDPNASESFVSL 198 Query: 200 ILTLRDALGLTVFLVTHDLDTLYAICDRVAVLSAKRVLVADRIEAVAAYDDAWIQQYFQG 259 I LRD + LTV +VTHDLDTL+A+ RVAVL+ K ++ R + V + +I+ +F+G Sbjct: 199 IRELRDEMHLTVVMVTHDLDTLFALSSRVAVLADKHIIAYCRPDKVVEFKHPFIETFFRG 258 Query: 260 PRGRAA 265 RG+ A Sbjct: 259 ERGQRA 264 >gi|152980121|ref|YP_001354989.1| ABC transport system ATP-binding protein [Janthinobacterium sp. Marseille] Length = 267 Score = 187 bits (474), Expect = 8e-49, Method: Compositional matrix adjust. Identities = 100/240 (41%), Positives = 148/240 (61%), Gaps = 1/240 (0%) Query: 17 VDNIIDVRGLRNQFGAQVVHDQLALQVRRGEILGVVGGSGTGKSVLLRSIVGLQRPAAGQ 76 + N++++R L +G + + +L + RG+++ V+GGSG+GK+ +LR I G RP AGQ Sbjct: 1 MSNLVEIRDLHFAYGERPILSELNMDFPRGKVIAVMGGSGSGKTTVLRLIGGQLRPQAGQ 60 Query: 77 VKVFGQDLSALSSEVRSRYERRFGVLFQQGALFSSLTVLENIALPLTEYGGLNAEEARGV 136 V V GQ + L ++ + R+ G+LFQ GALF+ ++V EN+A PL E+ GL+ E R + Sbjct: 61 VTVDGQVVHELDTKAVYQLRRKMGMLFQHGALFTDISVFENVAFPLREHTGLSEELIRDL 120 Query: 137 SAMKLALAGLPIAAGDKYPAALSGGMIKRAALARALALDPDILFLDEPTAGLDPISAAAF 196 MKL GL AA PA +SGGM +R ALAR++ALDP+++ DEP AGLDPIS Sbjct: 121 VLMKLHTVGLRNAA-QLMPAEISGGMARRVALARSIALDPELIMYDEPFAGLDPISMGMT 179 Query: 197 DRLILTLRDALGLTVFLVTHDLDTLYAICDRVAVLSAKRVLVADRIEAVAAYDDAWIQQY 256 LI L DALG T LV+HD+ ++I D V LS ++ + A D +++Q+ Sbjct: 180 ANLIRKLNDALGSTTILVSHDVHESFSIADYVYFLSKGAIVAEGTPAEMMASSDPYVKQF 239 >gi|152980415|ref|YP_001352504.1| sulfate transport system ATP-binding protein [Janthinobacterium sp. Marseille] Length = 355 Score = 127 bits (320), Expect = 6e-31, Method: Compositional matrix adjust. Identities = 86/235 (36%), Positives = 123/235 (52%), Gaps = 15/235 (6%) Query: 21 IDVRGLRNQFGAQVVHDQLALQVRRGEILGVVGGSGTGKSVLLRSIVGLQRPAAGQVKVF 80 I+V+ ++ QFG V + ++L GE+ ++G SG GK+ LLR I GL++P GQV + Sbjct: 3 IEVKNIQKQFGNFVALNNVSLDFPAGELTALLGPSGCGKTTLLRIIAGLEQPDHGQVLLD 62 Query: 81 GQDLSALSSEVRSRYERRFGVLFQQGALFSSLTVLENIALPL-TEYGGLNAEEARGVSAM 139 G+D SA R ER+ G +FQ ALF +TV ENIA L E++ + Sbjct: 63 GEDASA-----RHVRERQVGFVFQHYALFKHMTVFENIAFGLRVRPAATRPSESQIKEKV 117 Query: 140 K--LALAGLPIAAGDKYPAALSGGMIKRAALARALALDPDILFLDEPTAGLDPISAAAFD 197 L L L A D+YP LSGG +R ALARALA++P +L LDEP LD Sbjct: 118 TKLLELVQLDWLA-DRYPPQLSGGQRQRIALARALAVEPRVLLLDEPFGALDAKVRKELR 176 Query: 198 RLILTLRDALGLTVFLVTHDLDTLYAICDRVAVLSAKRVLVADRIEAVAAYDDAW 252 R + L D L +T VTHD + + D++ +++ V E + A D + Sbjct: 177 RWLRRLHDDLHVTSIFVTHDQEEALEVADQIVLMNKGNV------EQIGAPKDVY 225 >gi|152979961|ref|YP_001354796.1| spermidine/putrescine transport system ATP-binding protein [Janthinobacterium sp. Marseille] Length = 366 Score = 119 bits (298), Expect = 2e-28, Method: Compositional matrix adjust. Identities = 78/231 (33%), Positives = 116/231 (50%), Gaps = 11/231 (4%) Query: 20 IIDVRGLRNQFGAQVVHDQLALQVRRGEILGVVGGSGTGKSVLLRSIVGLQRPAAGQVKV 79 ++++R L +FG V D ++L + GE ++G SG GK+ LLR I G P AGQ+ + Sbjct: 3 LLEIRNLTRRFGDNTVVDNISLSIEAGEFFTLLGPSGCGKTTLLRMIAGFDVPDAGQILL 62 Query: 80 FGQDLSALSSEVRSRYERRFGVLFQQGALFSSLTVLENIALPLTEYGGLNAEEARGVSAM 139 G DL+ + E +R +FQ ALF +TV NIA PL AE + V Sbjct: 63 DGVDLTGVPPE-----QRPVRTVFQNYALFPHMTVGGNIAFPLEMANTPKAEIQKKVDEA 117 Query: 140 --KLALAGLPIAAGDKYPAALSGGMIKRAALARALALDPDILFLDEPTAGLDPISAAAFD 197 + L G +YP LSGG +R ++ARAL P +L LDEP + LD Sbjct: 118 LEDVRLTGF----AARYPHELSGGQRQRVSIARALVTRPKLLLLDEPLSALDAQLREQMQ 173 Query: 198 RLILTLRDALGLTVFLVTHDLDTLYAICDRVAVLSAKRVLVADRIEAVAAY 248 ++ L+ +G+T VTHD A+ R+AV++ +V D + +Y Sbjct: 174 IELINLQKEVGITFIYVTHDQAEALALSHRIAVMNKGQVEQLDEPTRIYSY 224 >gi|152983439|ref|YP_001353228.1| ABC-type transporter ATPase component [Janthinobacterium sp. Marseille] Length = 229 Score = 117 bits (293), Expect = 8e-28, Method: Compositional matrix adjust. Identities = 81/198 (40%), Positives = 109/198 (55%), Gaps = 6/198 (3%) Query: 43 VRRGEILGVVGGSGTGKSVLLRSIVGLQRPAAGQVKVFGQDLSALSSEVRSRYER-RFGV 101 V+ G+ L +VG SG+GKS LL + GL P+ G VK+ G D+ AL + R+ + + G Sbjct: 37 VQAGDTLAIVGASGSGKSTLLGLLAGLDTPSDGTVKLDGTDIFALDEDGRAGLRKSKLGF 96 Query: 102 LFQQGALFSSLTVLENIALPLTEYGGLNAEEARGVSAMKLALAGLPIAAGDKYPAALSGG 161 +FQ L L LEN+ LPL G A+E AM LA GL YP LSGG Sbjct: 97 VFQSFQLLGHLNALENVMLPLELRGDGKAKEK--AEAM-LARVGLSTRL-KHYPKYLSGG 152 Query: 162 MIKRAALARALALDPDILFLDEPTAGLDPISAAAFDRLILTLRDALGLTVFLVTHDLDTL 221 +R ALARA +P +LF DEPT LD + A +L+ L G T+ LVTHD ++ Sbjct: 153 EQQRVALARAFVSEPPLLFADEPTGSLDAATGEAVIQLMFELNRERGSTLVLVTHD-PSI 211 Query: 222 YAICDRVAVLSAKRVLVA 239 A+C R +SA R++ A Sbjct: 212 AALCKRTITISAGRLVQA 229 Database: BlastDatabases/707/707 Posted date: Apr 13, 2011 12:58 PM Number of letters in database: 1,221,021 Number of sequences in database: 3697 Lambda K H 0.320 0.135 0.377 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3697 Number of Hits to DB: 525,189 Number of extensions: 18810 Number of successful extensions: 251 Number of sequences better than 1.0e-08: 63 Number of HSP's gapped: 179 Number of HSP's successfully gapped: 68 Length of query: 282 Length of database: 1,221,021 Length adjustment: 82 Effective length of query: 200 Effective length of database: 917,867 Effective search space: 183573400 Effective search space used: 183573400 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 129 (54.3 bits)