BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.2868.p
         (362 letters)

Database: BlastDatabases/707/707 
           3697 sequences; 1,221,021 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|152980330|ref|YP_001354931.1| ABC transport system permease p...   150   8e-38
gi|152980680|ref|YP_001354988.1| ABC transport system permease p...   101   8e-23

>gi|152980330|ref|YP_001354931.1| ABC transport system permease
           protein [Janthinobacterium sp. Marseille]
          Length = 374

 Score =  150 bits (380), Expect = 8e-38,   Method: Compositional matrix adjust.
 Identities = 104/336 (30%), Positives = 172/336 (51%), Gaps = 15/336 (4%)

Query: 29  DDLVLTFSALSAFDTVGAKLLVDLLGVPMALRQTGEDSNLPRAWRGLLATVADAKAIAMP 88
           D+     S + A D +GA+LL +  G     ++      L          +     + + 
Sbjct: 50  DETRWDLSGIEALDYIGAQLLWNAWG-----KKRPPQLTLAPQHESFFQRLEQTGTLQVK 104

Query: 89  KAAAPRQAWITDMLERAGIATLNLRGCTRDLLGFTGLCLQ---TLASSFWRPSRWRFTAV 145
           +   P+  W T     +      LR     +LGF  L  Q    +     +P R  +  +
Sbjct: 105 RP--PQHRWYT----FSAYLQFKLR-MADHMLGFITLIGQLVMDMGRFIRQPQRGPWKEI 157

Query: 146 VAQVEQTGLDAVPIVSLLTFMVGAVVAFLGATVLADFGASLYTVDLVAFSFLREFAVLLT 205
            A +  TG  A+ I +L+ F++G V+++L A  L  FG  ++ V+++  S +RE   LL 
Sbjct: 158 SANIFHTGYQALGITALVGFLIGVVLSYLSAQQLHQFGGDIFLVNILGMSVIRELGPLLA 217

Query: 206 AILMAGRTASSFTAQIGSMKANEEIDAIRALGLDPVNLLVLPRLLALLVSMPLLTFIGMM 265
           AIL+AGR+ SS TAQ+G M+  EE+DA+  +GL     L++P+++AL +SMPLL      
Sbjct: 218 AILVAGRSGSSITAQLGVMRVTEELDAMLVMGLPHGYRLIMPKVIALAISMPLLVVWTDA 277

Query: 266 SGLLGGAMVCALSLDISPTMFLSLVQQDVGIRHFVLGMVKAPLFAFVIALIGCNEGFKVS 325
             L+GG     + L +S   FL  +   V + ++ +G+ K  +F  +IAL+ C+ G ++ 
Sbjct: 278 MALIGGMAAANVELGLSFKYFLRELPDAVPLANYWIGLGKGVVFGSLIALVACHFGLRIK 337

Query: 326 GSAQSVGEHTTSSVVQSIFVVILLDALAALFFMEMG 361
            + +S+GE TT SVV +I VVIL DA+ A+ F  +G
Sbjct: 338 PNTESLGEGTTISVVTAITVVILADAVFAIVFSGVG 373


>gi|152980680|ref|YP_001354988.1| ABC transport system permease
           protein [Janthinobacterium sp. Marseille]
          Length = 258

 Score =  101 bits (251), Expect = 8e-23,   Method: Compositional matrix adjust.
 Identities = 69/219 (31%), Positives = 117/219 (53%), Gaps = 2/219 (0%)

Query: 141 RFTAVVAQVEQTGLDAVPIVSLLTFMVGAVVAFLGATVLADFGASLYTVDLVAFSFLREF 200
           RF  V +Q+   G  ++ ++++    VG V+   G   L  +G+      LVA S  RE 
Sbjct: 39  RFRLVTSQIHFIGNYSLVLIAVSGLFVGFVLGLQGYYTLNKYGSEQALGLLVALSLTREL 98

Query: 201 AVLLTAILMAGRTASSFTAQIGSMKANEEIDAIRALGLDPVNLLVLPRLLALLVSMPLLT 260
             ++TA+L AGR  +S TA+IG MKA E++ A+  + ++P+  ++ PR  A +++MP+L 
Sbjct: 99  GPVVTALLFAGRAGTSLTAEIGLMKAGEQLSAMEMMAVNPLQRVLAPRFWAGVIAMPILA 158

Query: 261 FIGMMSGLLGGAMVCALSLDISPTMFLSLVQQDVGI-RHFVLGMVKAPLFAFVIALIGCN 319
            I    G+LGG +V    + +    F S +Q  V +    V G++K+ +F F +  I   
Sbjct: 159 AIFSAVGILGGYIVGVQLIGVDEGAFWSQMQGGVDVWNDIVNGVIKSIVFGFAVTFIALY 218

Query: 320 EGFKVSGSAQSVGEHTTSSVVQSIFVVILLD-ALAALFF 357
           +G++   + + V   TT +VV +   V+ LD  L AL F
Sbjct: 219 QGYEAQPTPEGVARATTRTVVIASLSVLWLDFLLTALMF 257


  Database: BlastDatabases/707/707
    Posted date:  Apr 13, 2011 12:58 PM
  Number of letters in database: 1,221,021
  Number of sequences in database:  3697
  
Lambda     K      H
   0.327    0.138    0.404 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3697
Number of Hits to DB: 692,877
Number of extensions: 25382
Number of successful extensions: 135
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 134
Number of HSP's successfully gapped: 2
Length of query: 362
Length of database: 1,221,021
Length adjustment: 84
Effective length of query: 278
Effective length of database: 910,473
Effective search space: 253111494
Effective search space used: 253111494
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 130 (54.7 bits)